Beta vulgaris (sugar beet): 104892014
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Entry
104892014 CDS
T03548
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
bvg
Beta vulgaris (sugar beet)
Pathway
bvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104892014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvg03019
]
104892014
Messenger RNA biogenesis [BR:
bvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104892014
mRNA degradation factors
5'-3' decay
Decapping complex
104892014
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_EML_2
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
104892014
NCBI-ProteinID:
XP_010676123
UniProt:
A0A0J8CKT8
LinkDB
All DBs
Position
4:32834214..32848910
Genome browser
AA seq
1366 aa
AA seq
DB search
MASTGNPNQQHQQQQQQQGFDMNKLFKPANLASPPLPQAVQNPNNLGPTPSASYPPPTAG
PYSFPSQAQAQAQQNPPPPYYHHMPPFPTQDQLHQQRSVSFPTPPLQPVPSAPPQNPSPG
ARLMALLSTPPPDFNYSPHNPTPLPLPHPSSSTVPVSPSVQPPAPIRMPSSKLPRGRHLL
GHHMSYDIDARLHGEEQPQLEVTPITKYVSDPGLILGHQIAVNKTYICYGLKMGNIRVLN
INTALRSLLRGHTQRVTDMAFFAEDVHLLASASIEGRVYVWKISEGPDEEEKPQISGNIV
LAIHITADEASVHPRVCWHCHKQEILVVAIGKSVLRIDTTKVRKGVEFSAEEPLVCPLDK
LIDGVQLVGKHEGEVTDLSMCQWMTTRLVSASKDGTIKIWEDRKTQPLLVLRPHDGHPVD
AAKFLAAPHRPDHIMLITAGPLNRQLKLWASSDEEGWLLPSDAESWRCIQTLELKSSAEP
RNEEAFFNQVVALSQGGLLLLANAKKNAIYAIHLEYGANPAATRMDYLAEFTVTMPILSF
TGTSDVLPHGEHLVQVYCVQTQAIQQYALDISQCLPPPLENLSLEKSESTVSRDASECVP
AIEPSGSKSFEVPLSAAKPSNLISGLGSSSEIKGPVSTAADVTSIQEITTSNVDSNPTSL
LSASSNAEVAPVASPSLPLSPRLSKKLSDLHGDLAVTDYPLDRQMDSAHTSSSALSASND
DSRTVQGNASDIANPAVMFKHPTHLVTPFEIMATSSADATRVSEKGENEAKIQDVVVTND
AANAEVEVKVVGETGFANPNESTRTVDPQIITERKEKSFFSQASDLGADMSRECCALPSE
SSIMEEARNSIMEALAQPSNSGEEEGDEANNDISGKPADFAVSTTVPQSPSPGAKGKKQK
GKNPQASGSLSPSQSVSNAAELLQGAVTGSSVAFMESSSQMLAVHETLNQILSTQKEMQK
QMSTVVSAPVTKEGRRLEAALGRSIEKASKANTDALWARIQEEITKLDKSLRDRMLQIPG
HITNIVNKDLPAVVERTLKKELAAVGTSVARTITPAIEKTISSAITESFQRGVGDKAVSQ
LEKSISSKLEATVARHIQAQFQTSGKQALQDGLRSCLESSIIPAFEMSCKAMFEQVDSAF
QKGMAEHTTAAQHQMESTNSQLALTLRDALNSASSLTQTLNGELADNQRKLLALAAAGAN
SKAGNPLITQLSNGPLGGLHEKVEQPFDPTKELSRLISEHKYEEAFTSALQRSDVSIVSW
LCSQVDLQRLLSTMPLPLSQGVLLSLLQQLACDITKDTARKLPWMTDVAACIIPHDPMIA
VHVRPILEQVYQILNHQRSLPTTSSSELSSIRVVMHVINSMLMTCK
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atggcttccactggaaatccaaatcaacaacatcaacagcagcaacaacaacaaggtttc
gatatgaataaattgtttaaacccgcaaatttagcatcacctccattacctcaagcagta
caaaaccctaacaatttaggtccaactccgtctgcctcgtatcctcctccaaccgctgga
ccctactctttcccctcgcaggctcaggctcaggctcaacaaaaccctccccctccttac
taccatcatatgcctcctttccccactcaagatcagctccaccagcagaggtctgtctct
ttccctacaccgcctctacagcccgttcctagtgcccctcctcagaaccctagccccggt
gcccgtcttatggctttgcttagcactccacctcctgattttaattactctccccataac
cctactcctctccctcttcctcacccttcttcgtccactgtccctgtttccccctctgtt
caaccccccgcccccattcgtatgcctagcagtaagcttcccaggggccgtcatttgctt
ggtcatcacatgtcttatgacattgatgctaggctgcacggagaggagcaacctcagttg
gaggtcactcctatcactaaatacgtttcggatcctggcctcatccttggtcatcaaatt
gctgttaataagacctatatatgctatggccttaagatgggaaacattcgtgttcttaac
ataaacactgccttgaggtctctgctacgaggtcatactcagagggtaacagacatggcc
ttctttgcggaagatgttcatcttctggctagtgcaagcatagagggacgggtttatgtg
tggaagatttctgaaggtccagatgaggaagaaaagccgcaaatttctggaaatatcgtg
ctagccattcatattactgcagatgaagcatctgttcatccgcgcgtttgctggcactgt
cacaaacaagaaatacttgttgtggccattgggaaaagtgtcctcagaattgatactacc
aaagttcgcaagggggttgaattttctgcagaggagcctcttgtttgtccgttggacaag
cttattgatggggttcagcttgtaggtaaacatgaaggggaggttaccgatttatcgatg
tgccaatggatgacgacccgtttggtttcagcttcaaaagatggaacaattaagatttgg
gaagatcgcaagacacaaccacttctagtattgaggcctcatgatggtcatcctgttgat
gcggccaagtttttggctgccccacatcgaccagatcatatcatgcttatcacagctgga
ccacttaatcgacagttgaagctctgggcttcatctgatgaagaaggatggttgctgcct
agtgatgctgaatcttggcggtgcatacagacactggagttgaagagttcggcggaacct
cgaaacgaggaagcatttttcaatcaggtcgttgcattgtctcaaggggggcttctttta
cttgcaaatgctaagaagaatgctatctatgcaattcacttagaatatggtgctaaccca
gcagcaacccgcatggattatctagcagagtttactgttactatgcctatcctgagcttt
actgggacaagtgatgtcttacctcatggggaacatctagttcaagtttattgcgtccag
acacaagccatacagcagtatgctttggacatctcccagtgcttgcctccaccattggag
aacttgagtttggaaaaatcggagtccactgtttctcgtgatgcgtctgaatgcgttcct
gcaatagagccatctggaagcaaatcttttgaggttcccttatctgcagccaaaccaagt
aacctcatcagtggccttgggagctcatctgagattaagggtcctgtgagcactgctgct
gatgtaacctccattcaggaaattactacttcaaatgtggattctaatcctacttcattg
ctatcggcatcaagcaatgctgaagttgcccctgttgcatccccttctcttcctcttagt
ccaaggttgtctaaaaagctcagtgatctccatggtgatctagcagttactgattatcct
cttgataggcagatggatagtgcgcatacaagctcatctgctttgtctgcgtcaaatgat
gatagcagaactgtacaaggaaatgcctccgacattgccaatccggctgtcatgttcaaa
cacccaactcatcttgttactccctttgagatcatggctacatcatcagctgatgctacc
cgtgtttctgagaaaggtgaaaatgaggccaaaattcaggatgtagttgtgactaatgat
gcagcaaatgctgaggtagaggttaaagttgtgggtgaaactggatttgctaatcctaac
gagtctactcgcacagtagatcctcaaattataacagaaagaaaggagaagtcctttttt
tctcaggcatcagatcttggggctgatatgagtcgagagtgttgtgcattgccatctgaa
tcatctatcatggaagaagctagaaatagcataatggaggctctagcgcaaccttcaaat
tctggtgaggaggaaggagatgaagccaacaatgatatatctggaaagcctgcagacttt
gctgtatcaacgacagtaccacagtctccttcaccgggtgccaaagggaaaaagcagaaa
gggaagaatcctcaagcatccggttcattatctccttcgcagagtgtttcaaatgcagcg
gaattgttgcaaggggctgttacgggttcaagtgtggcattcatggagtcttcttcacag
atgctggctgtgcatgaaacactaaatcagatattatcaacacagaaggaaatgcagaag
cagatgagtacagtagtttccgcaccggttaccaaagagggtagaaggctagaggcagct
ttaggacggagcatagagaaggcttcaaaggcgaatactgatgctttatgggctcgtata
caggaggagatcactaaacttgataagtcgttacgggaccgtatgctgcagatacctgga
catataactaatattgtgaacaaggacttgcctgctgtagttgagagaacgttaaagaaa
gaattggctgctgttggcaccagtgtagctcgcactataactcccgctattgagaaaact
atatcttcagctatcacagagtcttttcagagaggagttggtgacaaggcagtcagtcaa
ctggagaagtcgatatcttcaaaacttgaagcaactgtggctaggcacattcaagctcag
tttcagacttctgggaaacaagctcttcaggatggattgaggtcttgcttggagtcttct
atcatccctgcttttgagatgtcctgcaaagcaatgtttgagcaagttgattctgcattc
cagaagggaatggctgaacatacaacagcagcacagcatcaaatggaatcaacaaattct
cagttagctcttaccctgagggatgctctgaattcagcatcatcattgactcaaaccttg
aatggagaattggctgataatcagcggaagctgttagctcttgcagctgctggtgcaaac
tcgaaagcgggaaatcccttgatcacccaattgagtaacggacctttgggaggtctacat
gagaaagttgagcagccatttgatccaactaaggagctatcgagactaatctctgaacac
aagtatgaggaggcatttacttcggcattgcaaagaagtgatgtatctatcgtctcttgg
ctctgttcgcaggttgatctgcagcgtcttttgtcgacaatgcctttgcctttgagtcaa
ggcgtcctactctctcttctgcagcagcttgcttgtgacataacaaaggatacagctaga
aagttgccatggatgacagatgttgctgcatgcataattccacatgacccaatgattgca
gtgcatgtgcgtccgattttggaacaggtttatcagatcttgaaccatcaacgtagcctc
cctaccacctcttcctcagagctatcgagcatccgtgttgtcatgcatgtcatcaactcc
atgttgatgacctgtaaatga
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integrated database retrieval system
