Beta vulgaris (sugar beet): 104892301
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Entry
104892301 CDS
T03548
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
bvg
Beta vulgaris (sugar beet)
Pathway
bvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104892301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvg03019
]
104892301
03036 Chromosome and associated proteins [BR:
bvg03036
]
104892301
Enzymes [BR:
bvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104892301
Messenger RNA biogenesis [BR:
bvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
104892301
mRNA degradation factors
5'-3' decay
Decapping complex
104892301
Chromosome and associated proteins [BR:
bvg03036
]
Eukaryotic type
Gene silencing
piRNA pathway
104892301
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TFIIA
CMS1
Motif
Other DBs
NCBI-GeneID:
104892301
NCBI-ProteinID:
XP_010676491
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All DBs
Position
5:complement(3586938..3602119)
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AA seq
523 aa
AA seq
DB search
MNHNARPRYPPGIGNGRGGGSGGGNYAQQNPNFQNRPSYHNNQYHDQPQYVQRRAPQQNY
QQHQNQYQQQQQQHQQQQQQQQQQQWMMRRPANTSSDNAGSTQSSSNQVEKSNQTTNVDS
SAEDWKASLKLPPPDTRYQTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESI
PIALTGSDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVILVPTRELALQTSQVCKEL
GKHLQIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGICILKDCSMLVMDEA
DKLLSPEFQPSLEQLIRFLPGNRQVLMFSATFPVTVKDFKDRYLEKPYVINLMDELTLKG
ITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKM
LQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRY
GHLGLAVNLITYEDRFNLYKIEQELGTEIKQIPPHIDQGIYCR
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgaaccacaacgctcgcccgaggtatccgccggggatcggcaacggtcgcggcggcggt
agcggtggcggtaattacgcgcaacaaaaccctaattttcagaatcggccgtcgtaccac
aataatcagtaccacgaccagccacagtatgtgcagagacgcgcgccgcagcagaattac
cagcaacaccaaaatcagtatcaacaacaacagcaacaacatcaacaacagcaacaacaa
caacaacaacaacagtggatgatgcgacgtcctgctaatacttcttctgataatgctggt
tcaactcagtcttcttctaatcaagttgagaagtctaatcaaacgactaatgtggattcg
agtgccgaagattggaaggcaagtcttaagcttccaccgcctgatactcgttaccagaca
gaggatgtcactgctacaaaaggaaatgaatttgaagattatttcttgaaacgtgaacta
cttatgggaatatatgagaagggatttgaacgtccttctccaatccaggaggaaagtatc
ccaattgctttgacaggaagtgatattcttgccagagctaaaaatggaactggaaaaaca
gctgcattttgcatccctgtgctggaaaaaattgaccaagacaacaatgtaattcaagct
gttatacttgttcccactagagagttagcccttcaaacatcacaggtttgcaaagagctc
ggaaaacatctacagatccaggtcatggtcacaacaggagggacaagtttgaaggatgat
atcatgcgtttgtatcagccagtgcatttgctagttggaacaccaggaagaatactagat
ctggcaaagaagggtatatgcattttgaaggactgctccatgcttgtaatggatgaggct
gacaaactgttgtctcctgaatttcaaccttcactggagcagttgattcgttttcttcct
ggaaataggcaggttttgatgttttcagctacttttcctgtaactgtcaaggacttcaaa
gatagatatctagaaaagccctatgtcatcaacctgatggatgagcttactctcaaaggt
attacacaattttatgcttttgttgaagaaagacagaaggtccactgcctcaacacactt
ttctcaaagctgcaaataaaccagtccattatattttgcaattctgtgaatcgggtagaa
ttgttggccaagaaaattacagagcttggttattcttgcttttacatccatgctaagatg
ctccaggaccatcgaaacagagtattccatgatttccgcaatggtgcctgcaggaatctt
gtttgcacagatttgtttacaaggggtatagacattcaagcagtaaatgttgtaatcaat
tttgatttcccgaaaaactcggaaacctatctgcacagagttggtcgttctggaagatat
gggcaccttggattggctgttaacttaatcacatatgaggaccgctttaacttgtacaag
attgaacaagagcttgggactgaaatcaagcaaattcctccacacatagatcagggtatc
tactgtcggtaa
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