Beta vulgaris (sugar beet): 104892888
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Entry
104892888 CDS
T03548
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
bvg
Beta vulgaris (sugar beet)
Pathway
bvg03013
Nucleocytoplasmic transport
bvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bvg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104892888
03015 mRNA surveillance pathway
104892888
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvg03019
]
104892888
Enzymes [BR:
bvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104892888
5.6.2.5 RNA 5'-3' helicase
104892888
Messenger RNA biogenesis [BR:
bvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104892888
mRNA cycle factors
Common to processing body (P body) and stress granule
104892888
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
Helicase_RecD
NPHP3_N
nSTAND3
PhoH
ATPase
AAA_16
SRP54
AAA_22
Ribosomal_S13_N
AAA_25
AAA
AAA_32
Motif
Other DBs
NCBI-GeneID:
104892888
NCBI-ProteinID:
XP_010677214
UniProt:
A0A0J8CHZ8
LinkDB
All DBs
Position
5:complement(12189041..12207453)
Genome browser
AA seq
1292 aa
AA seq
DB search
MDSNANNLYETASQPDTGNDDAYTFLEFNTQGGGDEDDDFSYPQFNELSQPIRSSPSPSS
SSSAWPTPSDSIIAAEIKESQQPSEPPSSSSSGGPTKGRRGGGGGGGGVQGVASAVDALA
AGMSGLNFEETVGDEDGFVDQFGKGVGDFTEHACRYCGVQNPACVVRCNVPSCRKWFCNS
RGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKSESVVVL
LCREPCLSVNALKDMNWDLSQWCPLIDDRCFLPWLVKVPSEQEQLRARQISAQQINKIEE
LWKTNPDASLEDLEKPGVDDEPQPVVLKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKD
NLTVRWDIGLNKKRIAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQ
EEVALELRASQGVPVDINHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGH
EVEMQTVRNTLPRRFGAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYH
MAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHL
DTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREIAQSADVICCTCVGAGDPRLA
NFRFRQVLIDESTQATEPECLIPLVLGAKQAVLVGDHCQLGPVIMCKKAARAGLAQSLFE
RLVLLGVKPIRLQVQYRMHPALSEFPSNSFYEGTLQNGVTINERQSTGIDFPWPVPNRPM
FFYVQMGQEEISASGTSYLNRTEAANVEKIVTSFLRSGVVPSQIGVITPYEGQRAYIVNY
MSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRA
RYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLSNLKQSMVQFQKPKKIYNDRRLF
YGAAAGIVPNDSYTPVSSTGPNADRRGSRARGYMPPGAPNGTHKPAVHPTGFPMTRVPLP
PYHGAPPSQPYAIPSRGAVHGPVGAVPQVPQPGSRGFGAGRGNAAPIGSHLQHQGSQQPV
GSLGPSFNFPLESPNGQPSVGGPLSQPGFVSNMPVQGPSQSFRDGFSMSGMSQDFLGDDF
KSQGSHVPYNIAEFSTQASQSGYSVDYATQGAQSGFPGSFLNQNSQAGYSRFGSGSDFMS
QDYMAHGSQGLFTQVGFNDPSQDDNSQGHFGVGNANPLQSQGLMNPLYSQPFTHYNTQPM
NLQNVQHQQTQPQQQSAQQGLSSQNQKVHYSG
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
atggattcaaacgcgaacaatctctacgaaacggcgtcgcagcctgacacaggaaacgac
gacgcttacactttccttgaattcaacactcaaggtggaggagatgaagacgatgacttc
tcttaccctcaattcaatgaactatcacaaccaattcgttcttctccttctccttcttcg
tcttcttccgcttggcctactccttctgactccattatcgccgctgaaatcaaggaatct
caacagccttctgaacctccttcatcttcatcttctggtggtcccaccaaaggtcgtcgt
ggtggtggtggtggtggtggtggtgtgcaaggtgtggcttctgcggtggatgcgttggca
gctggtatgagtgggttgaacttcgaggagactgtcggcgatgaagatggatttgttgat
cagtttgggaaaggagttggggattttaccgaacatgcttgtaggtattgtggtgttcag
aatcctgcttgtgttgttaggtgtaatgttccgtcgtgccgtaaatggttctgtaattcc
agggggaatacttctggttctcatatcgtcaatcatctcgttcgagctaagcacaaggaa
gtttgtcttcataaagatagcccattgggagagacaattcttgagtgttataactgtggt
tgccgtaatgttttcctacttggatttatttctgccaagtccgagagcgtagtcgttctt
ctgtgtagggaaccttgtctgagtgttaatgcattgaaggacatgaactgggatttgagt
caatggtgtccactaattgatgatcgctgtttccttccttggcttgtgaaggttccttct
gagcaagagcaactgagggccaggcagattagtgcgcagcaaataaataagatagaagag
ctatggaaaacaaaccctgacgcatctttggaggatcttgaaaagcctggtgttgatgat
gagcctcagcctgttgttttgaaatatgaagatgcttaccagtatcaaaatgtatttgcc
ccacttattaagcttgaagctgattacgacaaaatgatgaaggaatctcagagtaaagac
aatctcacagtgcggtgggatattggtttaaataaaaagcgcattgcatattttgttttc
cctaaggaggataatgagctgcgtcttgtacccggtgatgagttacggctacgttactca
ggagatgctgctcatcctgcttggcagtcagttggtcatgtgattaagttgactgcacag
gaggaggtcgcacttgaactccgcgcaagtcagggagttcctgttgatataaaccatggt
ttcagtgttgattttgtttggaagagtacgagctttgatcgaatgcagggtgcgatgaaa
acatttgcagtggatgagactagtgttagcgggtacatttatcatcacttgctgggccat
gaagttgagatgcaaactgttcgaaatactttgcctcgtcgatttggtgctccaggcctt
ccagagctcaatgcatctcaggtttttgctgtaaaaagcgtactgcagaagcccattagt
ttgattcagggccctcctggcaccggaaaaactgtaacctctgctgcgatagtgtatcac
atggccaaacaaggtcaaggacaggtgctggtatgcgcaccaagtaatgtggccgtggat
caattggctgaaaagataagtgctactggtttaaaggttgttagactctgtgcaaagtca
agggaggctgtcagttcccctgttgagcatctcacacttcattatcaggttcggcacctt
gacacgtcagagaagagtgaacttcacaaattacagcaactgaaggatgaacaaggagaa
ttgtctagtagtgatgagaaaaaatacaaagcattgaaacgtgcaacagagagggagata
gctcagagtgctgatgtcatatgttgcacttgtgttggtgctggagatccccgacttgca
aatttcagattccgtcaggtactcattgacgagtctacacaagctaccgagcctgagtgt
ctcataccactggtacttggagccaagcaggctgttcttgttggtgaccactgtcaactt
ggtcccgtgataatgtgcaagaaagctgctcgagctggactagcacagtctctttttgaa
cgccttgtgttacttggtgtgaaacccatcaggctgcaggttcaatatcgtatgcatcca
gcgctttccgagtttccttccaatagcttctacgaaggtacactccaaaatggtgtgaca
attaatgaacgacaatcaacaggaattgattttccttggcctgtaccaaaccgcccaatg
ttcttctatgttcagatgggacaagaagagataagtgctagtggaacatcataccttaac
cgtacagaggctgcaaatgttgagaagatagttacttcgttcttgaggagtggtgtggtc
cctagtcagatcggggttataacaccttatgaaggacaaagggcatatatcgtgaactat
atgtcaagaaatggtgctctcaggcagcaactttacaaggaaattgaggtggcaagtgta
gattcttttcagggaagagagaaagattacatcattttatcttgtgttaggagtaatgaa
caccagggtattggattcctcaatgatcctcgtaggctcaatgttgcactgacacgtgcc
cgttatggtattgttatcttgggaaatcctaaagttctgagcaagcagccactttggaat
agcttattgactcattataaggagcatgagtgtttggttgaaggacctcttagtaacttg
aagcaaagtatggttcagtttcagaaaccaaagaagatttataatgatcgcagactattc
tatggtgcagcagctggtattgtgcctaacgatagttatacaccagtttcgtcgaccggc
ccaaatgctgatagacgaggtagtcgtgctagaggctacatgccaccgggggcccccaac
ggtacacacaaaccagcagtgcatcctactggattccccatgactcgagttcctcttcct
ccttatcatggtgcaccaccatctcagccgtatgccatcccctctcgaggtgctgtacat
ggtcccgttggagcagttcctcaagtccctcagcctggtagccgtggttttggtgctggc
cgtggcaatgctgctccgattggaagtcatttacaacaccaaggctcacagcaacctgtt
ggaagtcttgggcctagtttcaactttccattggaaagtcccaatggccaaccttctgtt
ggtggtccattgtcacaacctggttttgtttctaatatgcctgttcaaggacctagtcaa
tctttccgtgatgggttctcaatgagtggaatgtcacaggacttcttgggtgatgatttt
aagagtcagggatcacatgttccttacaatattgcggagttctcaacacaggcttcacaa
agtggatattctgttgattatgctacacaaggagcacagtctggttttccaggaagcttc
ctgaaccaaaactctcaagctggatattctcgttttggtagcggaagtgattttatgtct
caggattatatggcacatggatcccaaggtcttttcactcaagttggcttcaatgatcca
tctcaagatgacaactcacagggccattttggtgttggaaacgcaaacccccttcaatcg
cagggcttgatgaatcctctgtattcccagccctttacacactacaacacacagcccatg
aatttgcagaatgttcagcaccagcagacacagcctcagcagcagtctgctcagcagggc
ttgagctcacagaaccagaaggtccactacagtggttga
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