Beta vulgaris (sugar beet): 104893157
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Entry
104893157 CDS
T03548
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
bvg
Beta vulgaris (sugar beet)
Pathway
bvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104893157
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvg03019
]
104893157
03012 Translation factors [BR:
bvg03012
]
104893157
Enzymes [BR:
bvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104893157
Messenger RNA biogenesis [BR:
bvg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104893157
Translation factors [BR:
bvg03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104893157
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
BEX
T2SSE
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
104893157
NCBI-ProteinID:
XP_010677543
LinkDB
All DBs
Position
5:complement(19972965..19995480)
Genome browser
AA seq
1052 aa
AA seq
DB search
MSLRCFPLSSTSTSTSRSVSSTISLLKHLTPFPFYSNKPPSLLNLSPLLFRSPMSYRPNS
QGGRRGGGGRNRGGGNRGGGGGRGGRGGGGGGGGEQRWWDPVWRAQRLAQKATEYEVLDE
NEWWNEMDGLKKGGEQELIIKRCFRREDQEILSNMAQQLGLHFHAYNKGKTLVASKVPLP
DYRADLDERHGSTQKEIRMSTDIEKRVGSLLDNSNGASSSEKSIGASSQSSKNSSSSMNF
AKPVAVLENNIAKEKISAELKEQEEKLKASASVQAMWSFREKLPAFKVRSEFLKAVANNQ
VLVVSGETGCGKTTQLPQFILEDEISSLRGADCSIICTQPRRISAISVAARISSERGENL
GETVGYQIRLEMKRSAGTRLLFCTTGVLLRQLVQDPNLTGVSHLLVDEIHERGMYEDFLL
IILKDLLPRRPDLRLILMSATINAELFSQYFGNAPTIHIPGLTFPVAELFLEDVLEKTQY
CIKPEPDSFQGGSRRRARQLDSKRDPLTELFEDVDINSHYGSYKTSTRKSLEAWSGSQLD
LKLVESTVEHICRHENEGAILVFLTGWDEISKLLDSIKANNFLGDTRKFLVLPLHGSMPT
VNQREIFDKPPASTRKIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSW
ISKASAHQRRGRAGRVRPGVCYRLYPKLVYDAMPQYQLPEILRTPLQELCLNIKSLQLGA
VGSFLAKALQPPDSLAVQNAIELLKTIGALDEREELTPLGRHLCTLPLEPNIGKMLLMGS
IFQCLNPALTIAAALAHRNPFVLPINRKEEADDAKRSFAGDSCSDHIALLKAFEGWKEAK
SNRTERSFCWENFLSPITLQMMDDMRKQFVDLLSNIGFVDKAKGPNAYNQYSHDMEMVCA
ILCAGLYPNVVQCKRRGKRTSLYTKEVGQVDIHPASVNAGVHLFPLPYMVYSEKVKTTSI
YIRDSTNISDYALLMFGGSLLPSKSGEGIEMLGGYLHFSASKSVLELIKKLRGELDKLLR
RKIEEPSLDINTEGKGVVAAVVELLRSQNLRY
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atgtctttgcgctgcttcccattatcaagtacaagtaccagtacaagcagaagtgtttcc
tccactatctctctcctaaaacacttgactccatttcctttctactccaacaaacctcct
tctcttctcaatctctctcctctcctcttccgctcacccatgtcttaccgccccaacagc
caaggcggtcgtcgaggcggaggcggcagaaatcgaggcggcggaaatcgcggcggaggc
ggaggaagaggcggacgtggcggcggcggcggtggaggaggtgagcagcgctggtgggac
ccagtgtggcgtgctcagcgtctcgcacagaaagccaccgagtatgaagtgttggatgag
aacgaatggtggaatgagatggatggattgaagaaaggaggagagcaggagttgattatc
aagcgttgttttaggcgggaagatcaagaaattctatctaatatggctcaacagttgggg
cttcatttccatgcgtataacaaaggaaagacgcttgtcgccagcaaagttcccttacca
gattatcgtgcagatctagatgaacgtcatggatctacgcagaaggagatacgaatgtct
acagacattgagaaacgggttggttcattgttggataactctaatggcgcaagttcttct
gaaaagtccattggtgcatcctctcagagttcaaagaattcatcatcctcaatgaacttt
gcgaaaccagttgctgttttagagaataatattgctaaggagaaaattagtgctgaactc
aaggagcaggaggagaagttaaaggcaagtgcaagtgtacaagcgatgtggtcattcaga
gagaagctccctgctttcaaagtgagatctgaatttctaaaagctgttgctaataatcag
gtccttgttgtgtcaggggagactggctgtggtaaaactacccagctccctcagttcatt
ttggaagatgaaatttcatcactacggggtgctgactgcagtataatatgtacccaaccg
cgtcgtatatcagctatatctgttgctgctcggatatcatctgaaagaggagagaatcta
ggtgaaactgttggctatcagatacgtctggagatgaaacgttctgcagggacaaggtta
ctgttctgcacaacaggagttttgcttagacaattggttcaggatccaaatttaactggt
gtgagccatctgctagtggatgaaattcatgaaagaggaatgtatgaggacttccttctt
ataatattaaaggatcttctccctcgtcgtccagatctacgactgattcttatgagtgct
accattaatgctgagttgttctctcaatattttgggaatgcccccactattcatattcct
ggactgacttttccagttgcagagctttttctggaagacgtgctagagaaaacccaatat
tgtatcaaaccagaacctgatagctttcagggtggctcgagacgacgagctagacaattg
gattcgaaaagagatcctttaactgaattgtttgaggatgttgacattaattcacattat
ggaagctacaaaacgagtacaagaaaatctcttgaagcatggtctggctcacaacttgat
ttgaaacttgttgagtcaactgtcgagcatatatgtcggcatgagaatgaaggggcaata
cttgtgtttctcactgggtgggatgaaatttctaagctactcgacagcattaaggcgaac
aattttcttggagacactagaaagtttcttgttctccctttacatggttcaatgccaact
gtcaatcaacgggaaatatttgataagccacctgcaagtacaaggaaaattgttcttgca
accaatatcgcagagagtagtattactattgatgatgtagtttacgtaatagattgtgga
aaggcaaaggagactagctatgatgctttgaataagctagcttgtctgttgccatcatgg
atttcaaaagcgtcagctcatcagagacgaggtcgtgctggtcgagtgcgacctggagtt
tgttatagactgtatcccaaactagtttatgatgcgatgccccaatatcagctaccagaa
attcttcggacacctttgcaagaactatgtctgaacataaagagtttgcaacttggagct
gttgggtcatttttggcaaaagcacttcagccaccagattcccttgctgtccaaaatgct
attgaacttttgaagacaattggtgctttagatgagagggaagagcttactcctcttggt
cgacacctttgcactttgcctctggaaccaaatattgggaagatgcttctaatgggctca
atcttccaatgcctaaatccagcattgacaattgcagctgctcttgctcaccgtaatcca
tttgtcctgccaatcaataggaaggaggaagctgatgatgcaaagagatcctttgctggt
gattcttgcagtgaccatatagcacttctaaaagcatttgaagggtggaaagaagcaaaa
tccaataggacagagagatcattttgttgggagaacttcttgtcgccaataactctacaa
atgatggatgatatgaggaaacaattcgtagatctactctcaaacataggcttcgtggac
aaagcaaagggtcctaacgcttataaccagtacagccacgatatggagatggtgtgtgcc
atcctttgtgctgggctttaccccaatgtcgttcaatgcaagagaagaggaaaacgaaca
tcactttacaccaaagaagttgggcaagtcgacattcatcctgcttctgtaaatgctggg
gttcatctttttcctttgccttatatggtttacagtgagaaagtgaaaacaactagcata
tacattcgtgattcaacaaatatttcagattatgctcttctcatgtttggtggtagtctc
cttccaagcaaatcaggagaaggaattgagatgcttggtgggtaccttcatttttctgcg
tcaaaaagtgtgttagaattaataaagaaattgcgaggtgagcttgataaactcttacga
aggaagatcgaagaaccaagcttagacatcaacaccgaaggaaagggtgtggttgctgct
gtagttgagttgttgcgtagtcaaaacttaagatattga
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