KEGG   Beta vulgaris (sugar beet): 104894337
Entry
104894337         CDS       T03548                                 
Name
(RefSeq) histone deacetylase 6
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
bvg  Beta vulgaris (sugar beet)
Pathway
bvg03082  ATP-dependent chromatin remodeling
bvg03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:bvg00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    104894337
   03083 Polycomb repressive complex
    104894337
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:bvg03036]
    104894337
Enzymes [BR:bvg01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     104894337
Chromosome and associated proteins [BR:bvg03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     104894337
   HDAC complexes
    Sin3A-HDAC complex
     104894337
    BRAF-HDAC complex
     104894337
    REST complex
     104894337
    SHIP complex
     104894337
    MiDAC complex
     104894337
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     104894337
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    104894337
  Chromatin remodeling factors
   NuRD complex
    104894337
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 104894337
NCBI-ProteinID: XP_010678848
LinkDB
Position
5:complement(47413463..47421429)
AA seq 450 aa
MEDPAILGGASLPSPASTDAKKRRVTYFYEPSIGDYYYGQGHPMKPHRIRMAHNLIVHYS
LHRRMEINRPFPAASSDIRRFHSDDYVDFLSTVSPELCAANSISSSVSSLDHSHSRHLKR
FNVGDDCPVFPGLFSFCQASAGGSIGAAVKLNRKDADIAINWAGGLHHAKKSEASGFCYV
NDIVLGILELLKYHRRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKD
IGANSGKHYSLNVPLNDGIDDDSFRGLFRPIIQKVMDIYQPDAVVLQCGADSLSGDRLGC
FNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGIEPDNKLPYNEY
YEYFGPDYTLHVEPSNMENQNSPKDLEKIRNILLEQLSRITHVPSVPFQTTPPNAKEPEE
EEEEDKDQRMKPRIWNGEDYDSDPEDHVMP
NT seq 1353 nt   +upstreamnt  +downstreamnt
atggaagatcccgccattctaggaggcgcatcactcccttcacccgcatcaaccgacgcc
aagaaacgccgcgtaacctacttctacgaaccttcaatcggcgactattactacggtcaa
ggccaccccatgaaacctcaccgcattcgtatggcccacaatctcatcgtccactactct
cttcatcgtcgcatggaaatcaaccgcccttttcccgctgcatcttctgatattcgtcgc
tttcattccgacgactacgttgattttctctccaccgtctcacctgaactttgtgccgca
aattctatctcttcttccgtttcttcgctcgatcactcgcactctaggcatcttaagagg
tttaatgttggcgatgattgtcctgtttttcctgggcttttctcgttttgtcaagcgtct
gctggtggttcgattggtgcggcggttaagttgaatcgtaaggatgcggatattgctatt
aattgggctggtggtttgcatcatgctaagaagtctgaagcttctgggttttgttatgtt
aatgatattgtgcttgggattcttgagcttcttaaatatcataggcgggtgctgtacatc
gatattgatgtgcatcatggagatggtgttgaagaggccttttacaccactgatagagtt
atgacagtttcttttcacaagttcggtgacttctttcctggaactggacacatcaaagac
attggagctaattctgggaagcattactctttaaatgttccactcaatgatggaatagat
gatgacagtttcagaggtcttttcaggcccatcattcaaaaagtcatggatatataccag
ccagatgcagttgtcctgcaatgcggggcggattcactctctggtgacaggcttggttgt
ttcaacttgtctgtaaaaggtcatgctgattgcttgcgatttcttagatcttttaacgtc
cctctaatggtgctgggtggaggaggatacactatacgaaatgtagctcgttgctggtgc
tatgagacagcagtcgcagttggtatagaacctgataataagcttccttacaatgagtat
tatgagtattttggcccagattacacccttcatgtggagcctagcaacatggaaaaccag
aactcgcccaaagatttggagaaaatccggaatattcttctagagcaactatctagaata
actcatgttccaagtgttccatttcagacaactcctcctaacgcaaaggagccagaagag
gaagaagaagaagataaggatcaaagaatgaaacctcgcatttggaatggtgaggattat
gattctgatcccgaggaccatgtgatgccttaa

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