Beta vulgaris (sugar beet): 104894454
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Entry
104894454 CDS
T03548
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
bvg
Beta vulgaris (sugar beet)
Pathway
bvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104894454
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bvg03041
]
104894454
Enzymes [BR:
bvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104894454
Spliceosome [BR:
bvg03041
]
Complex A
U2 snRNP components
U2 related factors
104894454
Complex B
104894454
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
Motif
Other DBs
NCBI-GeneID:
104894454
NCBI-ProteinID:
XP_010678983
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All DBs
Position
5:complement(48438841..48443627)
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AA seq
1140 aa
AA seq
DB search
MGEAEDVKSKSRREESETKEESKRSRGREREHDKEREKERNGEKERRRDREKERDRENTH
RRSERERSTDDKHRERDREKHRDKHRDREKERKKDREDRDGDKEERDKEREREKAKVRER
EEREREREKEREQREKEREKERERERRERERERERERERERERREREREREKEERDKERE
RERERKRREVASDDSGDERRDKDRKRRRRDDDYKERERERSKSKDPERVRSHRHRDGSVD
SQKKKSDDEPDKNLEKVENKEQDMEEEQRRLDEEMEKRRRRVQEWQELKRKKEEEERQQL
GEVNAEEPKAGKNWTLEGESDDEEAALDGNSDAEMDVDEDSKPSAETGDTMVVDSENGNA
LPVGGAAASEEEEVDPLDAFMNSMVLPEVEKLNNVVLPAESTELNGKDKKIEQSNGQVSK
RDPKKFLGRIMPEEDSDSDYGDLEDDEVNSDDEDDDEFVKRVKKKTKAEKLALVDHSKID
YIDFRKNFYMEVKEIARMSLEDVAAYRKDLELKVHGKDVPKPIKTWHQTGLTTKILEVIR
KMNFEKPMPIQTQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPLMPGDGPIG
LIMAPTRELVQQIHNDIKKFAKVVNLICVPVYGGQDSRQQIGDLKKGAEIVVCTPGRMID
ILCTSGGKITNLRRVTFLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVE
VLAKKVLNKPVEIQVGGRSVVNRDITQMVEVRPESERFFRLLEILGEWYEKGKILIFVHS
QDKCDALFRDLLKSGYPCLSLHGGKDQGDRESTLADFKSNVCSLLIATSVASRGLDVKEL
ELVVNFDVPNHYEDYVHRLGRTGRAGRKGHAITFISEEEEKYAPDLAKALELSDQPVPQD
LKAIADGFLAKVKQGLEQAHGTGFGGSGYKFDEQEDEARKAAKKAQAKEYGFEYDKSDSE
DEDDEVRKRTDVTVPTPVLGGQVSDTTSLPGSVLGATGNGPASILPINSADNPAVATAMA
AAMRLQQSLAKLQQDAMPEHFEAELEINDFPQNARWKVTHKETLGPISDWTGAAITTRGQ
YYPPGKIAGQGERKLYLFIEGRSEHSVKTAKTELKRVLEDITTQATSLPGGAQPGRYSIL
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgggggaagcagaggatgtgaaatcgaagtcgaggagggaagagtctgagacaaaggag
gagtcgaaacggagccgtgggcgtgagcgtgagcatgataaggaaagagaaaaggaaagg
aatggggaaaaggagaggaggagagacagggagaaagagagggatagggaaaatactcat
aggcgttcggagagagaaaggagtactgatgataagcatagggaaagggatagagagaag
cacagggataaacatagagatagggagaaggaacggaagaaagatcgagaggatagggat
ggggataaagaagagagagataaggagagggagagggagaaggcaaaggttagggaacga
gaggaaagagagagggagcgagaaaaagaaagggaacaaagggagaaagagagagaaaag
gaacgagagagggagaggagggaaagagagagggaaagagagagggagagagaaagagaa
cgtgagaggagagaacgtgaacgtgaacgggagaaggaggaaagagataaggagagggaa
agggaaagagagaggaagcgtcgtgaagtagcaagtgatgacagtggtgatgagaggagg
gacaaagataggaaacggcggaggagagatgatgattacaaggaaagagaacgagaaagg
agcaaatcaaaagacccagaaagggtccgatcacatagacacagggatggtagtgtggac
agccaaaagaagaagagtgacgatgagcctgacaaaaatctggagaaagtggagaataag
gaacaagacatggaggaggaacagaggagattggatgaagagatggaaaaacggaggagg
agagttcaggaatggcaggagttaaagaggaaaaaggaagaagaggaaagacagcagcta
ggggaggtaaatgctgaagaacctaaagcaggtaagaattggacactggaaggtgaatcc
gatgatgaagaagctgctctagatggaaattcagatgcagaaatggacgtggatgaagat
tctaaaccatcagctgaaactggtgacactatggtggttgattctgagaatggtaatgca
ttaccagttggtggtgctgcggcatctgaagaggaggaggttgatcctctggatgctttt
atgaactcgatggtcttgcctgaagttgagaagttgaataatgttgtgcttcctgcagag
agcactgaactgaatggcaaggataaaaaaattgaacaaagtaatggccaagtgtctaaa
agagacccaaagaagtttcttggtagaataatgcctgaggaggattctgactctgattat
ggggatctagaggatgatgaagtgaactcagacgatgaagatgatgatgagtttgtgaaa
agggtaaagaaaaagactaaagctgagaaattagccttagttgatcactcaaagattgat
tatattgacttcaggaagaatttttacatggaagttaaggagattgcaaggatgagtctt
gaggatgttgctgcttatcggaaggatctggagctgaaggttcatggaaaagatgtgcca
aaaccaatcaaaacttggcaccaaactgggttaacaacaaaaattttggaggtgatcaga
aagatgaactttgagaagccaatgccaatccaaactcaggctttgcctgtgattatgagc
ggtcgagattgcattggtattgcaaaaactggctcgggaaagactttggcttttgtgtta
cctatgttgaggcacataaaagaccagccacctctgatgcctggagatggtccaataggg
cttattatggctcctacaagagagctggtccagcaaattcacaatgacatcaaaaagttt
gccaaagtagtgaatctgatatgtgttcctgtatatggtggccaagattctaggcagcaa
ataggggatctgaagaagggagcggaaattgtggtatgcacccctggtagaatgatagat
atactctgtacaagtggcggaaagataacgaatctgagaagagttacttttttggttatg
gatgaagctgatagaatgtttgatatgggttttgaacctcagataacaagaattgtccag
aatataagaccagatcgtcaaactgtactgttctctgccacctttcctcgtcaggttgag
gttttggcaaagaaagtcctgaataagccggtggaaatccaggttggtgggaggagtgtt
gtcaacagagacataacccagatggttgaagtgagacccgaaagcgaaaggttcttcaga
ctgttggaaattcttggggagtggtatgagaagggaaaaattctgatctttgtccattca
caagataaatgtgatgccttgttccgggatttactcaagagtggttatccctgcctttct
cttcatgggggaaaagatcagggggatcgtgaatctacgcttgccgattttaagagtaat
gtgtgcagcttgttgattgctaccagtgttgcttctaggggtctggatgtgaaagaactt
gagctagttgttaattttgatgttcctaaccattatgaagactatgttcatcgtcttggc
cggacaggtcgtgctggccggaaggggcatgctatcacttttatctctgaagaagaggaa
aaatatgctcctgatcttgcaaaagcattggaactctcagatcagcctgttccgcaggac
ctgaaggcaattgctgatgggtttttggcgaaggtgaaacagggacttgaacaagcccat
ggaaccggttttggtggaagtggttacaagtttgatgagcaggaggatgaagcacggaaa
gctgcaaagaaagcgcaggccaaagagtatggttttgagtatgacaagtcagattcagag
gatgaagacgacgaagttcgtaagaggacagatgttactgtaccaactcctgttcttggt
gggcaagtgtcagataccacatcgcttcctggctcagtgctgggcgcaactggcaatggg
cctgcctctattctgcccattaattcagcagataatccagccgttgcaactgcaatggca
gcagcaatgaggttacaacaaagcttagctaagctgcaacaagatgcaatgcctgaacat
tttgaagctgaacttgagatcaatgatttcccacagaatgctcgctggaaggtgactcat
aaggagactttgggtcctatatctgactggactggagctgccattacgaccaggggacag
tattaccctcctggaaagattgcgggtcaaggtgaacgtaaactctatctgttcattgag
gggcgttcagagcattcagtcaagactgctaagacagaactaaagagggttttggaggat
atcacgacacaagccacctctcttccgggtggtgcccaaccaggcaggtattctattctc
tga
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