Beta vulgaris (sugar beet): 104894798
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Entry
104894798 CDS
T03548
Symbol
LOC104894798
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
bvg
Beta vulgaris (sugar beet)
Pathway
bvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104894798 (LOC104894798)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bvg03041
]
104894798 (LOC104894798)
03009 Ribosome biogenesis [BR:
bvg03009
]
104894798 (LOC104894798)
Enzymes [BR:
bvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104894798 (LOC104894798)
Spliceosome [BR:
bvg03041
]
Complex A
U2 snRNP components
U2 related factors
104894798 (LOC104894798)
Complex B
104894798 (LOC104894798)
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
104894798 (LOC104894798)
Ribosome biogenesis [BR:
bvg03009
]
Eukaryotic type
90S particles
Helicases
104894798 (LOC104894798)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
WHD_HA2
Helicase_C
DEAD
AAA_22
AAA_19
Cas3-like_C_2
nSTAND3
T2SSE
ABC_tran
SRP54
AAA_7
AAA_SelU
AAA_30
NACHT
nSTAND_NTPase5
TsaE
Motif
Other DBs
NCBI-GeneID:
104894798
NCBI-ProteinID:
XP_010679427
LinkDB
All DBs
Position
5:67443082..67447714
Genome browser
AA seq
731 aa
AA seq
DB search
MGTERKRKVSLFDVVDENAITPGKLTKSNGGISMLMNNGGANLTVNPWNGRPYSQRFFEI
LEKRKSLPVWQQKEEFLKVLSTSQTIVLVGETGSGKTTQIPQFVLEAVDLDTPDKRRKNM
VACTQPRRVAAMSVSRRVAEEMDVTLGEEVGFSIRFEDCSGPRTVLKYLTDGMLLREAMT
DPLLERYKVIILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQDYFNGA
PLMKVPGRLHPVEIFYTQDPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRK
INKEVGNLGDQVGPVKVVPLYSTLPPAMQQKIFESAPPPTKEGGPPGRKIVVSTNIAETS
LTIDGIVFVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYTE
KSFHNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLG
ALDDEGNLTKLGEIMSEFPLDPQMGKMLVVSPEFNCSNEILSVSAMLSVPNCFLRPREAQ
KAADEAKARFGHIDGDHLTLLNVYHAYKQNQEDPAWCYENFINQRTLKAADNVRQQLVRI
MSRFNLKLCSTDFNSRDYYVNIRKAMLAGYFMQVAHLEKTGHYLTVKDNQVVHLHPSNCL
DHKPEWVIYNEYVLTSRNFIRTVTDVRGEWIVDIAPHYYDLENFPNCEAKRVLEKLYKKR
DKDREESKNRR
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgggaaccgaaagaaaaaggaaggtgagtttgttcgacgtagttgacgaaaacgccata
actccaggcaaattaacaaaatcaaacggtggaatctcgatgttgatgaacaatggtggc
gctaatctcacagttaatccatggaatggaagaccttattctcagcgattttttgagatt
ttggagaagcgaaaatctttgcctgtttggcagcagaaggaggagtttttgaaggttctt
agtaccagtcagactattgtgttggtcggtgaaactggtagtggtaaaactactcagatt
ccgcaatttgtcttggaagctgtggatttagatactcctgataaacggcggaagaacatg
gttgcttgtactcagccacgtagggtggcagctatgtcagtttcacgtagagttgcagag
gaaatggatgtgactctgggagaagaagttggtttcagcattcgtttcgaggattgtagt
ggtccgagaactgttttgaagtatttgaccgatggtatgcttttgagagaagcaatgaca
gatcctcttctagagaggtataaagttataattcttgatgaagctcacgaaagaacattg
gcaacagatgtgctgtttgggcttctgaaggaagtgttgagaaatagaccagacttaaag
ctggttgttatgagtgctactcttgaagctgagaaatttcaggattatttcaatggtgca
ccccttatgaaagttcctggaaggctgcatcccgtggaaatcttttacacccaggatcct
gaaagagactaccttgaggcagctattagaactgttgtacaaatacacatgtgtgaacct
cctggcgatatacttgttttccttactggagaggaggagattgaggatgcttgccgtaaa
atcaataaagaagtgggaaatttgggtgaccaagtcggccccgtgaaagttgtccctttg
tattctactcttcctcctgctatgcagcagaaaatatttgaatctgctccaccgccaaca
aaagagggaggtcctcctgggaggaaaattgtggtgtctactaatattgctgaaacttct
ttgaccattgatggtatagtttttgtgatagatccaggatttgcaaaacagaaagtctac
aatcctcgtgttcgtgttgaatcattgttggtttctcctatatcaaaggcaagtgcacac
cagagagctggtcgtgctggaagaacacagcccggtaaatgctttaggctatacacggag
aagagtttccataatgatctccagcctcagacgtatcctgaaatcttgcggtcaaacctt
gcaaatactgtactcacactgaagaagttgggtattgatgacctggtacattttgacttt
atggatcccccagctccagagactttgatgcgagcattagaggtgttgaattatcttggt
gcattggatgatgaagggaatttgacaaaacttggagaaattatgagtgaatttccactg
gatcctcagatgggaaagatgcttgttgtgagccctgagttcaactgttcaaatgaaatc
ctctcagtatctgcgatgctttcagtacccaattgctttttgcggcctagggaggcccag
aaagctgcagatgaagcgaaagctaggtttggacacatcgacggggatcacctgacgctg
ttgaatgtataccatgcctacaagcagaatcaggaagacccagcttggtgttacgagaat
tttattaaccagaggacattaaaggctgcagataatgtgaggcagcaacttgtccgcatt
atgtcaaggttcaacctaaagttatgcagcactgatttcaacagcagggattactatgtc
aacatacggaaggcaatgttggcaggatatttcatgcaagtagcacacctggaaaaaaca
ggacattatttgacagtgaaagataaccaagtggttcatttgcatccttcaaattgccta
gaccataaaccagagtgggttatatacaacgaatatgtgttgactagccggaatttcatt
cgtactgttactgatgtccgtggagaatggattgttgatatagcaccacactactatgac
cttgaaaacttccctaactgcgaagcaaaacgggttctagagaagctttacaagaagcgc
gataaggacagggaagagagtaagaacaggaggtag
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integrated database retrieval system
