Beta vulgaris (sugar beet): 104895023 Help Entry 104895023         CDS       T03548                                  Symbol LOC104895023 Name (RefSeq) vacuolar sorting protein 39   KO K20183   Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39 Organism bvg  Beta vulgaris (sugar beet) Pathway bvg04142   Lysosome biogenesis bvg04145   Phagocytosis bvg04148   Efferocytosis Brite KEGG Orthology (KO) [BR:bvg00001]  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagocytosis     104895023 (LOC104895023)    04142 Lysosome biogenesis     104895023 (LOC104895023)    04148 Efferocytosis     104895023 (LOC104895023)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:bvg04131]     104895023 (LOC104895023) Membrane trafficking [BR:bvg04131]  Endosome - Lysosome transport   Tethering complex    Hops complex     104895023 (LOC104895023) SSDB OrthologParalogGFIT Motif Pfam:  Vps39_1 CNH zf-Vps39_C Clathrin zf-HC5HC2H TPR_WDR35 zf-HC5HC2H_2 Motif Other DBs NCBI-GeneID:  104895023 NCBI-ProteinID:  XP_057251437 LinkDB All DBs Position 6:3178313..3192149 Genome browser AA seq 1005 aa AA seqDB search MVHSAYDSFELVSDFPTKIDAVESYGSKLLLGCSDGSLRVYASESSGSEASLPSDHHAFQ LELTKEPYSLERTINGFSRRPIIVMEVLRSKDLLLSLSESISFHKLPSFETVAVISKAKG ANAYSWDDSRAFLCFSRQRRVCIFRHDGGRGFVEVKEYSVPDTVKSMAWCGENICIGVRK DYMILNASTGALSEVFSSGRISPPLVVSLPYGGMLLGKDNIGVFVDQHGKLGQEGRICWS EAPCQIVMHEPYAIGLLPRHVEIRSLQQPYPLIQTVVLRNVRHLIRSNDTILVALEKSVH GLFPVPLGAQIVQLTASGNFEEALSLCKLLPPEDSSLRAAKESSIHVRYAHYLFENGSYE EAMEHFVASQVDITYVLSLYPSIIVPRSSALPEQEKVIDFGLDASDLSRCSSGLSDDMEA SPRAHIELEENADMESKIVSHNTLMAFIKFLQKKRFNIIEKAAAEGTDEAVSDAFGANFK SFDSNRPKKSNKGRGSITISSSGRERAAILDTALLQAFILTGQSSATVELLRGVNYCDLK ISEEFLLKKNQYTALLELYKCNDMHRESLKLLLQLIEESKAGHPRADLTQKFTPEMLIEY LKPLCGTDPMLVLEFAMLVLEVCPTQTIELFLSGNIPADLVNSYLKQHAPNMQANYLELM LSMNEDGISGNLQNEMVQIYLSEVLDWYRELISQKQWDETAYSPTRKKLLSALESISGYN PEGLLKRLPADALYEERAILLGKLNQHELALSLYVHKLHVPELALSYCDRVYESQPSGKS HSNIYLTLLQIYLNPRRTTRNIERRINHTVSTPNAEIKRVNSSASIRSKGVRSTRKIAEI EGAEDVRFSPSNTDSGKSDGDADEASCEGGSNIMLDEALDLLSQRWERVNGAQALKLLPR ETKLKDLLSFLGPLLRKSSEAHRNFSVIKRLRESENLQVKNELFNKRKDVVKVTGDSMCS LCNKKIGTSVFAVYPNGTTLVHFVCFRDSQSMKAMRGSQLRKRSQ NT seq 3018 nt NT seq  +upstreamnt  +downstreamnt atggtccatagtgcatatgactccttcgagctagtcagtgatttccctacaaagattgat gccgttgaatcgtacggttcaaagcttctccttggttgcagtgatggatcacttcgagtt tacgcttctgaatcctctggctctgaagcatctttgccgtctgatcatcacgccttccaa ttagagctcacgaaagaaccctactctcttgagagaaccataaatggcttctcacgtagg ccaatcattgttatggaagttttgaggtcaaaagacctactactttctctgtctgaatct atttcgtttcataagctcccctctttcgagactgttgctgtaatttccaaagccaaaggt gcaaatgcatattcttgggatgattctagggcctttttgtgcttttccaggcagaggagg gtctgtattttccgacatgatggtgggcggggctttgtcgaggtgaaagagtatagtgtt ccagatactgtgaagtcaatggcttggtgtggtgaaaatatatgcatcggagttcggaag gattatatgatactcaatgctagtactggtgcattgtccgaagtgttttcttctgggaga atctccccacctttagtggtgtctctcccctatggagggatgcttctcggcaaggataat attggagtttttgtggaccaacatgggaagcttggacaagaaggcagaatttgttggtct gaggctccttgtcaaattgttatgcacgagccttatgctataggtctcttgcctagacat gtcgagatacggtctcttcaacaaccgtatccccttatacaaactgttgtcttgcggaat gttcggcatctcatacgaagcaatgatacgattcttgtagcattagaaaaatctgttcat ggcctcttccctgttcctcttggtgcgcagatcgtgcaattgacagcatctggaaatttc gaggaggctttatctttgtgtaaactccttccaccagaagattcaagccttagagctgca aaggagagttctatccacgttagatatgcacattatttgtttgaaaatgggagctatgag gaggctatggagcattttgtggcttctcaagtcgatatcacatatgtgctatcgttatac ccatccattattgttccaaggtcaagtgcgcttcctgagcaggagaaggtgatagatttt ggtctggatgcttcagatctctctaggtgttcgtcaggtctatcagatgatatggaagct tcacccagagcacatattgaattggaggaaaatgctgacatggagtccaaaatagttagc cataatactcttatggcttttatcaagttcttgcagaagaaacggttcaatattattgaa aaagccgcagcagagggaacagatgaggctgtttctgatgcttttggtgctaatttcaaa tcttttgactccaataggcccaagaagtccaataagggtcgtggcagcattaccatcagt tcaagtggtcgtgagagggctgctatcctggacaccgcacttctacaagcctttattctc acggggcagtcttctgcaactgtggaactattgagaggtgtgaactactgtgatttgaag atatctgaggagttcttgcttaaaaaaaatcaatatactgccttgctcgaattgtacaag tgcaatgatatgcaccgcgaatctttgaagcttttgctccaactaatagaagagtcaaag gcaggccacccacgagctgacctcacccagaagtttacacctgaaatgctcattgagtat ctgaagcctctttgtgggacagaccccatgcttgttctggaatttgcgatgcttgttctt gaagtctgtccaacacagactattgagctctttctgtcaggaaatattccagcagacttg gttaattcctacttgaaacagcatgctccaaatatgcaggctaattatttggaactcatg ctttccatgaatgaagatgggatctctggtaacctacaaaatgaaatggtgcaaatctat ctctcagaggtacttgattggtatagggagctgatttcacaaaagcaatgggatgagacg gcttactctcccacaaggaaaaaattattgtctgcactggagagcatttcagggtacaat ccagaaggtctcttaaagcgtcttccagctgatgccttgtatgaagagagggcaattttg ttgggaaaactgaaccagcatgaacttgctctttctctctatgtacataagcttcatgtt cctgaactggctctttcttactgtgatcgagtttacgagtctcagccttctggaaagtct cacagcaatatatatcttactctcctacaaatctatctaaatcctaggaggacaacaaga aacattgagagacgaatcaaccatactgtctcaaccccgaatgctgaaattaaaagggtt aattcctctgcctcaattagaagcaaaggagtccgttcaactaggaaaattgctgaaata gagggtgcagaagacgtgcgctttagccccagcaacacagacagtgggaagagtgatggt gatgcagatgaagccagctgtgaaggagggtccaatataatgcttgatgaggcccttgat ttgttgagccaaagatgggaaagggtcaatggagcacaggccctgaaattgttaccaaga gaaactaaactaaaggatttgctttcttttcttggaccactattaagaaaatccagcgaa gcacatagaaatttctcagtgatcaagagacttagagagagcgagaatctgcaggtaaaa aatgagctcttcaacaaaaggaaagatgtcgtcaaggttactggtgatagcatgtgttcc ctctgcaacaaaaagatcggaacaagcgtgtttgcagtctacccaaatggcacaacttta gtccactttgtttgctttagggactcgcaaagcatgaaggctatgagaggctctcagtta agaaagagatcacaatag

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