Beta vulgaris (sugar beet): 104895355
Help
Entry
104895355 CDS
T03548
Name
(RefSeq) probable NOT transcription complex subunit VIP2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
bvg
Beta vulgaris (sugar beet)
Pathway
bvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104895355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvg03019
]
104895355
Messenger RNA biogenesis [BR:
bvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104895355
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104895355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
104895355
NCBI-ProteinID:
XP_010680135
LinkDB
All DBs
Position
6:5725044..5734323
Genome browser
AA seq
663 aa
AA seq
DB search
MSGVLNSSMNGSASNITDNTGRSFPSPFSVQSGAAPGFHHTGTLQGLHNMHGSFNVPSMT
GTLSSRNSSINAVPSGGMQQSAGNLLAGRFGSNNLPVVLSQISHGSSHQHSGVTNRGGMN
AIGSPLYNSSTNAVGGSIPGVLSTSTGMGNRGNAPGIGVSPLLGNAGSQITSSVGNVVGS
GSGYIGRNSGGTLSMPGLASRLNLGSNSGSGSLGLHGPNRLMSGGLQQASPHVMSMLGNS
YASGGGPLSQSHVQAVNNLNSMAMLNDVNSNENSTFGVDDFPLLNNRPNSAGGAHGQIGS
MRKQGIGGPGNQQNQEFSIQNEDFPALPGQKGGNADYGMDFLQKDQFRDSSMSMMQNQHF
TMGRSAGFTLGGAYPSPRPQQHQQHMPSVSGGSDSFVPVNNQGRPHLHGSDMFPSSNSTY
HIQGNGPPDNGMRSINNLSAMSGVASYDQQMQQYQQQNPSQFQLRQMSAIDPSFRDHGVR
SVLATQAAPDRFCLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSSEDLHKTFSSPWSD
KTTKGDPEFVVPQCYYEEPAPSLNHVFFMKFQMETLFYIFYSMPNDEAQLYAANELTRRG
WFYHKELRMWFSRFPNLEPLVKAPTYERGCYLTFDPITWETKRKDNFVLQYDLIEKKPTL
HQH
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggtgtactaaattcatctatgaacggatcagcttctaacattacagataacact
ggaaggtcatttccttctcctttttctgttcagtctggtgctgctcctggttttcatcat
actggtactcttcaggggcttcacaacatgcatggtagcttcaatgttcccagcatgacc
ggtacactttcgtcaagaaattcatcaataaatgctgtaccttcagggggaatgcaacaa
tcggctggaaacctccttgctggacgatttggatctaataatcttcctgttgttctttct
cagatttctcatggtagctcacatcagcattctggagttaccaatagaggaggtatgaac
gctataggaagccctctgtataatagtagcacaaatgctgtcggtggttcaattcctggg
gttctttcaacatctacaggcatgggtaaccgtggtaatgctccaggaattggggtgtca
cctcttttgggtaatgcaggttctcaaatcacaagttcagtgggaaatgtggttggatct
ggctctggctacattggtagaaattctggtgggacattatccatgcctggtcttgcttct
cgtctaaatttgggttctaatagtggctctggaagtttaggtttgcacggaccaaacaga
ttaatgagtggtgggcttcagcaagcttcgccacatgtaatgtccatgcttggaaactcc
tatgcttctggtggaggcccattatcccaaagccatgtccaagctgttaataatctgaac
tcaatggcgatgctgaatgatgtgaactccaatgagaactcaacttttggtgtggatgat
tttcctttgctaaacaatcgacctaattccgctggaggggctcatggacaaataggttca
atgagaaaacaaggtattggtggtcctggtaatcaacagaaccaagaatttagcattcag
aacgaagattttccggctttacctggacaaaaaggtggaaatgctgattacgggatggac
ttccttcaaaaagatcaatttcgtgatagtagtatgtcgatgatgcaaaatcagcatttc
acaatgggaagatccgctgggttcactctaggtggtgcatacccgtcgcctcgcccacag
cagcatcagcaacatatgccatcagtcagtggtggcagtgactcttttgtgcctgtaaat
aatcagggtcgtccgcatttgcatggatcagatatgtttccatcttccaattcgacgtat
cacattcagggcaacgggcctcctgataatggcatgagatctataaacaacttaagtgca
atgtctggtgtggcttcatatgaccaacaaatgcagcaatatcaacagcaaaacccatct
cagtttcaactacggcagatgtcagccatagatccatcatttcgggatcatggtgtcaga
tctgttctggctacacaagctgcgcctgaccgattttgtttgttaggtttgttgagtgtc
ataaggatgagtgatcctgatctgacgtccctagctctcgggattgatttgactactctg
ggtttgaatttgaactcttctgaagaccttcacaaaacgttttcttccccatggtctgac
aaaactaccaagggagatcctgaatttgttgtacctcaatgttactatgaggaaccagct
ccatcgctgaaccatgtattcttcatgaagtttcagatggaaactctgttctacatcttc
tacagcatgccgaacgatgaagcccagttgtatgcagcaaatgaacttaccagaagagga
tggttctatcataaagagcttcggatgtggttctcgaggtttcccaatttggagccgctt
gtcaaggctcccacgtacgagagagggtgttaccttacgtttgatccaataacatgggaa
acaaaaagaaaggataactttgttctccagtacgacttaatagagaaaaaacctactctt
catcaacattag
DBGET
integrated database retrieval system
