Beta vulgaris (sugar beet): 104895777
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Entry
104895777 CDS
T03548
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
bvg
Beta vulgaris (sugar beet)
Pathway
bvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104895777
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bvg03041
]
104895777
Enzymes [BR:
bvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104895777
Spliceosome [BR:
bvg03041
]
Complex C
Other components
Step II factors
104895777
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
AAA_24
FtsK_SpoIIIE
SLFN-g3_helicase
SRP54
ATPase
ABC_tran
TrwB_AAD_bind
Motif
Other DBs
NCBI-GeneID:
104895777
NCBI-ProteinID:
XP_010680672
LinkDB
All DBs
Position
6:complement(11384121..11397491)
Genome browser
AA seq
706 aa
AA seq
DB search
MPSMANSQFRQPNGIVSNNDSRRQKILQQRKSLPIAVVEKRLIEEVRNNHTLIIVGETGS
GKTTQLPQFLLKAGFCRQEKLIGVTQPRRVAAVTVAKRVAEECGVQLGQKVGYSVRFDDM
TSGSTRIKYMTDGLLLREALLDPYLSKYSVIVVDEAHERTVHTDVLLGLLKNVQKARSQT
ANELVDQIKINNDTKLEKDNGTQMASPLKQCQGAKLPPLRLIIMSASLDARIFSEYFGGA
KAVHVQGRQFPVDIFYTLHAETDYVEAAMVSIFQIHLEEALGDILVFLTGQEEIESVEGL
VRDKLPQLPESSRNIVTVPIYASLPSEQQMKAFMPAPAGSRKVILATNIAETSVTIPGIK
YVIDPGVVKARNYNPRTGIESLNIIPTSKAQALQRSGRAGREGPGKCFRLYTEREFEKLA
DSTVPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRMAIVKSLEELFLLGALTEDYKL
SDPIGLQMARLPLDPIYSKALILSSQFNCLEEMLIAVAMLSVESIFFTPREKQEEARTAI
RRFSSPEGDHITMINVYKSCDEFLESGNAKSSKEKTFKSMKKWCKENFVNGRSLRHARDV
HCQIRGHVEQMGLRIASCGGDMLLFRRCLAASFFLNAALKQPDGTYRALASSQMVQIHPT
SVLFRAKPDCIIFNELVRTNQNYIRDVTRIDPMWLTELAPHFYAAQ
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcaatggctaattcacaatttaggcaacccaacggcatcgtttcgaacaatgat
tccaggaggcaaaagattttgcagcaacgaaaatctcttccaattgctgttgttgagaaa
cgactaattgaagaggttcgcaataatcacactctgattattgttggtgaaactggaagc
ggcaaaactactcaattacctcagtttttgttaaaagccggcttctgccgtcaggaaaaa
ttgattggggttactcaacctaggcgtgttgctgctgtcactgtggctaaaagagtagct
gaggaatgtggtgtgcaattagggcaaaaggtaggatattcagttcgattcgatgacatg
acttctggatcaacgaggatcaagtacatgacagatggattattattaagggaagcatta
ttggacccatacctatctaaatattcagttattgttgttgatgaagctcatgagagaact
gttcacactgatgtgttactgggcctgctgaaaaatgttcagaaagctagatctcaaact
gcaaacgagttagttgatcaaatcaagataaataatgacacaaagttggagaaagataat
gggactcaaatggcctccccgctcaagcaatgccaaggtgcaaaacttcctcctctaagg
ctgataataatgtctgccagcttggacgcacgtatattctctgagtactttggtggtgca
aaggctgttcatgttcagggaagacaatttcctgttgatatattttatactctccatgct
gagacagattatgttgaggcagcaatggtgtcaatatttcagattcatttggaggaggct
cttggtgatatacttgtatttttgactggtcaagaagagattgaatctgtagaggggctt
gtgagagacaaattgccacaattacctgaaagcagtcggaatattgtgaccgtccctatt
tatgcatctcttccctcagaacagcaaatgaaagcttttatgcctgcgccagctggatct
cgtaaggtaatactggcaacaaacattgctgagacatcggtgaccataccaggaatcaaa
tatgttatagaccctggagtggtgaaagcccgcaactataatccacgtacagggatagaa
tcactaaacattattcctacttcaaaagcacaggctcttcaaaggagtggacgtgcaggg
cgtgaaggacctggaaaatgcttccgcctttacacagagagagaatttgagaaacttgcg
gattccacagttccagaaattaagcgttgcaatctctcaaatgtcattttgcagctgaaa
gctcttggtgttgacgatattattggctttgacttcatggaaaaaccttcacggatggca
attgtgaagtctctggaagaactattcttgcttggtgctctaacagaggattataagctt
tcagatcctattgggcttcagatggctaggcttccattagatcctatatattctaaggct
ctcattctatctagtcaattcaactgcctggaggaaatgttgatagcagtcgcaatgctc
tctgttgaatcaattttttttacaccacgtgaaaagcaagaagaggctaggactgcaata
agacgattttcaagccctgagggggaccacataaccatgattaatgtgtataaatcatgt
gatgagtttttggagagcggcaatgcaaaaagcagcaaggaaaaaacatttaagagtatg
aagaaatggtgcaaagaaaattttgtaaatggtcgctcattgaggcatgctcgtgatgta
cactgccaaatccgaggccatgttgaacaaatgggccttcgtattgcttcatgtggaggg
gatatgcttctatttcgcagatgccttgcagcttcctttttcctcaatgctgccttgaaa
cagcctgatggtacctatagggccttggcaagcagtcaaatggtgcaaatccaccctact
tctgtgttgtttcgggcaaaaccagactgcataatattcaatgaacttgttagaactaac
cagaactatatccgcgacgtaactaggatcgatccgatgtggttgacagaactggctcct
catttttatgccgcacagtaa
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