Beta vulgaris (sugar beet): 104896635
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Entry
104896635 CDS
T03548
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
bvg
Beta vulgaris (sugar beet)
Pathway
bvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104896635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvg03019
]
104896635
03012 Translation factors [BR:
bvg03012
]
104896635
Enzymes [BR:
bvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104896635
Messenger RNA biogenesis [BR:
bvg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104896635
Translation factors [BR:
bvg03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104896635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
AAA_19
Dicer_dimer
NACHT
ATPase
nSTAND3
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
104896635
NCBI-ProteinID:
XP_010681704
LinkDB
All DBs
Position
6:30528744..30555023
Genome browser
AA seq
1228 aa
AA seq
DB search
MKDWAQSSVYVPPHQRLRSVITVPSSTSINDAHSPARSTSIDNHQGLTSIPNPNFDARIS
PNNHNQGSAAAAGGGYFQFNQQRNLSPSSPNQHQNGNVNWNSESFHYKFYNRPKNYLFNG
DRQLTHSQPKSGVVDEVSEEGSDREFGEFEPSSYPSGSGPTAGNVEHWKSKLNMLLRDKD
KQELISREKKDRHDFEQIANVANKMGLYSHSYVKVVVFSKIPLPNYRFDLDEKRPQREVA
IDCSLQRRVDAYLADYLSHKAKSANILHDNGLSRSSSSGSIATDEGFFEQPEPLNLSSSV
MERIIRRRNLQLRDQQLAWQECAEGRKMLEFRRSLPAFKERDALIRAIACNQVIIVSGET
GCGKTTQIPQFILESEIESSRGASCSIICTQPRRISALSVAERVAAERGEKLGESVGYKV
RLEGMKGRDTRLLFCTTGILLRRLLVDRTLKGITHVIVDEIHERGMNEDFLLIVLKELLP
RRPELKLILMSATLDAELFSSYFGGAPLVNIPGFTYPVRTHFLEDMLEISGYRLTPYNQI
DDYGPDRSWKMNKQGFRKRKSQIASVVEDALAAADFRDYSTQTRESLSCWNPDSMGFNLI
EHILCHICEKEGPGAVLVFMTGWDDISSLKDKLQAHPVFGDPSRVLLLACHSSMASSEQR
LIFEKPEDGVRKVVLATNIAETSITIDDVVFVLDCGKAKETSYDALNNTPCLLPAWISKV
SAQQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPEILRTPLQSLCLQIKSLKLGSISEF
LSRALQSPELLAVQNAIEYLKVIGALDTNENLTVLGRYLTMLPMEPKLGKMLVSGAIFSC
LDPVLTIVAGLSIRDPFLTPMDKKDLAEAAKAQFSRDYSDHLALVRAYDGWKSAEKEYGG
HDYCWKNFLSVQSMKAIDSLRREFYTLLKDTGLVDDNSSFFNGWSQDDKLLRAVICYGLY
PGICSVVHNEKSLSLKTMEDGQVHLYSNSVNAREPRIPYPWLVFNEKIKVNSVFLRDSSA
VSDSMVLLFGGNIVKGATDGHLIMLGGYLEFFMKPVMAETYLNLKRELEDFVQLKLLNPK
MDTHAYQDLLSATRLLVSEDNCEGRFVFCRQNLKSTTKSVSPMVPTLSSRTQSGPGGDNS
KSQLQTLVTRAGYTAPIYKVKQLSNNQFRATVEFNGMQIIGRPCNNKKSAEKDAASEALE
WLMGGTQMGNEQVNHMSMLLKKSKRYHN
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
atgaaggattgggcgcagtcttctgtgtatgtgccaccacaccagaggctgaggtcagtc
atcaccgtcccttcttcaacttccattaatgacgcacattctccagctcgcagtaccagt
atcgataatcaccaaggtctcacttcaatccctaaccctaattttgatgctagaattagt
ccgaataaccacaatcaaggtagtgctgctgctgctggtggaggatattttcagtttaat
cagcagcggaacctgtcgccttcgagtccgaatcaacatcagaatggaaatgtgaattgg
aattccgagagctttcactacaagttctataaccggcccaagaattatttgtttaatggt
gatcgccagcttactcattctcagccaaagtctggcgtcgttgatgaggtttcggaagag
ggttcggaccgcgaatttggggagtttgagccttcttcttatccttctgggtctggtcca
actgctggtaatgtggagcactggaaatcaaagctgaacatgcttctacgggacaaggac
aaacaagaattgatatccagggagaaaaaggaccgacatgactttgagcagatcgctaat
gtggcaaacaagatgggtttgtatagccattcatacgtcaaagtagtagtttttagtaag
atcccactgccgaattacagattcgatcttgatgaaaagcgtcctcagagagaggttgca
atagattgtagtttgcagaggagagtggatgcttatcttgccgactatctttctcacaaa
gctaagagcgcaaatattttacatgataatggactttcaagatcaagtagtagcggtagc
attgccactgatgaaggtttctttgagcaaccagaacctctgaaccttagcagttctgtc
atggagagaatcataaggcgcagaaacttgcagcttcgtgatcagcagcttgcttggcag
gaatgtgctgaaggaaggaaaatgctggagttccgtagaagccttccagcattcaaggag
agagatgcactgataagagccattgcatgtaatcaggtcatcattgtctctggggaaaca
ggttgtggtaaaactactcaaattccacaatttattttggagtctgaaatagaatctagc
cgtggagcgtcatgcagtataatatgtactcagccaagacgaatatcggcactttcggtg
gccgagagggttgctgcagagcgaggggagaaattgggagaatctgttggttataaagtt
cggttggaggggatgaaagggagagatacgcggcttctgttttgcactacaggcatcttg
ctgcggagattacttgttgacaggactttgaagggaataactcatgttattgtggatgag
attcacgaacgtgggatgaatgaagattttcttcttattgtgctcaaagagctacttcct
cgtagaccggagttgaagttgattttgatgagtgcgactttagatgctgagcttttctct
tcttattttggcggtgctcctcttgtcaacattccaggattcacgtaccctgttcgaact
catttcctagaggatatgttggaaatatctggatatagattgactccttacaatcagata
gatgattatggtccagatagatcgtggaagatgaataaacaaggcttcaggaaaaggaag
agtcagattgcctctgttgttgaggatgcacttgctgctgcagacttcagagactatagt
acacagaccagggaatctttatcctgttggaatccagattctatgggatttaatcttatt
gaacatatactttgccatatttgtgaaaaggaagggccgggtgctgtgttagttttcatg
accggatgggatgacataagctcacttaaggataaactccaagctcatcctgtcttcgga
gatccgagtagagtcttgttgcttgcttgtcacagttcgatggcaagttctgaacagagg
ttaatatttgagaaaccagaagatggagtgcgcaaagtagtgctggctactaatattgcg
gagaccagtatcacaattgatgatgtggtctttgttcttgactgtggtaaggcaaaggag
acgtcatatgatgccttaaataatacaccttgcttgcttcctgcttggatctcaaaggtt
tccgctcagcagagaagaggaagggctggtcgtgttcaacctggagaatgttaccatctg
tatccaagatgtgtatatgatgcttttgcagattaccagcttccagaaatcctgaggaca
cctctgcagtccctttgtctgcagatcaaaagtttaaaacttggcagcatctctgagttc
ctgtccagagctctgcagtcacctgaattactggcggttcaaaatgcaatagaatatttg
aaggttatcggggcattggacacaaatgaaaatctcactgttctaggtaggtacctaaca
atgctaccaatggagccaaagcttgggaaaatgcttgtatcaggcgctatatttagctgt
ctggatccagtgttgactatagttgctggcctcagcatcagagatccctttctgacaccc
atggacaagaaagaccttgcagaggctgctaaagcgcagttctcgcgcgattatagtgac
catcttgcacttgttcgcgcgtatgatggatggaagagtgctgagaaagagtacggtggt
catgactactgctggaaaaattttctctcagtacagtccatgaaagctattgattctctt
cggagggaattctatactttgttgaaggatactggactagttgatgataattcatccttc
ttcaatggatggagccaggacgataagcttcttcgtgctgttatatgctatggattgtat
ccaggaatctgctctgttgtgcataatgagaagtcattgtcattaaagacaatggaggat
ggtcaggtgcacctgtactcgaactctgtcaatgctcgtgagccgagaatcccatatcca
tggcttgttttcaatgagaaaattaaagtaaactcagttttcctccgtgattctagtgca
gtgtcagattcaatggtcttactgtttggaggaaacattgtcaaaggtgcaacggatggg
catctaattatgttgggaggatacttggaattttttatgaaacctgtgatggcagaaact
tacttgaacctaaagagagaactggaggattttgtgcagctgaagctcctaaatcctaag
atggatacacatgcttatcaggaccttctgtctgctacgaggcttttggtttcagaggat
aattgtgagggccgatttgtgttttgccgccagaatttaaagtctactactaaatctgtt
tcgccaatggtgccgacattgtcgtctagaactcaaagtggacctggtggtgataactcc
aagagtcagcttcaaaccttagttactagggcaggttatacagcccctatatataaagtg
aaacaactgtcaaataatcagttcagagcgactgtagagttcaatggaatgcagataata
ggtcggccttgcaataacaagaagagtgcagaaaaagatgcagcttctgaagctttagaa
tggctaatgggtgggacccaaatgggaaacgagcaagtcaatcacatgtcgatgctgctg
aaaaagagcaagaggtatcacaactga
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