Beta vulgaris (sugar beet): 104896859
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Entry
104896859 CDS
T03548
Name
(RefSeq) THO complex subunit 2
KO
K12879
THO complex subunit 2
Organism
bvg
Beta vulgaris (sugar beet)
Pathway
bvg03013
Nucleocytoplasmic transport
bvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104896859
09122 Translation
03013 Nucleocytoplasmic transport
104896859
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvg03019
]
104896859
03041 Spliceosome [BR:
bvg03041
]
104896859
Messenger RNA biogenesis [BR:
bvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
104896859
Spliceosome [BR:
bvg03041
]
Complex C
Other components
EJC/TREX
104896859
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
104896859
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
104896859
NCBI-ProteinID:
XP_010681949
LinkDB
All DBs
Position
6
Genome browser
AA seq
1861 aa
AA seq
DB search
MSISSIECTYISDDFLHQLKNGDPNLKLANPVPVLRFLYELVWSMVHATLPFQKCKAALD
AVEFSVAVSEEELGSYFADIVTQMALDLTMSGEFRARLIKLASWLVECSLVPVRFFQERC
EEEFLWECEMVKIKAQELKSKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCEGSGAF
NSSSPTIGTIKSLIGHFDLDPNRVFDIVLECFEMQPQNDLFLDLIPLFPKSHASQILGFK
FQYYQRLEVPNSIPFGLYQLAALLVKEDLVDLDSIYAHLIPKDEQAFENFSAASIKRLDE
ANKIGKINLAATGKDLMDDEKQGDVTVDLYAAIDMENQAVHESVSELENSQTLGLLTGFL
LVDDWYHASILFERLSPLTPVAYGQICDELFRLIGKSMSSAYDSVRKLHLVNSVNGPTAL
ETADILSSSLVLLPKELFEMLACAGPYLYRDTLLLQKVCRILKAYYLSALELISKGDGTP
VSIGNVSVVPRLHLREARSRIEEALASCLLPSLQLVPANPAIGQVIWEVMSLLPYEARYR
LYGEWEKDDERIPMILAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANPLTVLRTI
VQQIEAYRDMIMPVVDAFKYLTQLEYDVLEYVVIERLAQSGREKLKDDGLNLSDWLQSLA
SFWGHLCKKYPSMELRGLFQYLINQLKRGQGIELLLLQELIQQMANVQYTENMTEEQLDS
MAGGDTLRYLATSYGISRNNKALIKSTNRLRDSLVPKEEPKLAIPLLLLIAQYRSLVVIN
ADAPYIKMVSEQFDRCHGVLLQYVDFLCSAVSPATAYAQLVPTLDDLVHQYHLDPEVAFL
IYRPVMRLFRHHNSSISWPLCDHDEPSDAGNLVLDLGPSHNSARWLDLLDTIRTMLPSKA
WNSLSPDLYATFWGLSLYDLYVPRRRYESEIAKQHAALKALEEISDNSGSAIAKRKKDKE
RIQESLDRLMSELQKHEENVASVHKRLANEKDKWLSSCPDTLKINMEFLQRCIFPRCIFS
MPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLHPMICCCTEYEAARLGRFLFETLK
IAYFWKSDESVYERECGNMPGFAVYYRYPNSQRVTYGQFIKVHWKWSQRITRLLIQCLES
AEYMEIRNALIMLTKISIVFPVTRKSGINIEKRVAKIKGDEREDLKVLATGVAAALAARK
PSWVTEDEFGMGYLELKPAPSVAPKSSTGNGSGIGVSQSEPTGGRVTSEAQPLDSGNSLK
DQACRSKPIDGRSERPESVSGSAKKGGSMANGPDLQPTGTQVGLLRLSESQKQVDESLSK
IVEENVAKGVSKSSADSEQKNAAKRGSAAVGSKPLKQEPKDDTKSAKVGRTSGASGSERD
HISHLTEGRQIGQANVSSGSVTNGNLAPPSKGLASLTRVEIEANDLRSEVGPTKSSNLKG
VLRDDGTDLPDLSRPTHSRSAHSPRHDAGAKPIERQQKRNSPAEEPDRLHKRRKGDPEMR
DVEVDVRLTDRERTVEQKILDKSYPSEVDKAGTEELAFSLVADKHADRTKEKTTEKYERE
YRERSERNDKLRSDDTSEKSRARSMERYGREHSVERVPERRIDRGFDGLNDKARDERSKD
DRTKPRYNEVSSEKSHSDDRFHCQNLPPPPPLPPHVVPQSVNASRRDEDVERRFPTARHA
QRLSPRHEEKERRRSEESLLTAQDDSRRRREDDLRDRKREERETSTMKVEEREREKEKEK
ERERERDRASVSKEEIDSTAASKRRKLKREHIPGGEPGEYTPVAPQPPISIGMSQPYDAR
ERGDRKGSMIQRPTYFEEPVMRMHVKEPASKMARRDVDPIYERDWDDEKRQRVEAKRRHR
K
NT seq
5586 nt
NT seq
+upstream
nt +downstream
nt
atgtctatttcttcaatagagtgtacatatatatcggatgattttctccatcaattgaaa
aatggagaccctaatttgaaattggccaatcctgttcctgtgcttcgcttcctttacgag
ctcgtttggtccatggttcatgctaccttgccgtttcagaaatgtaaagcagcattggat
gcggtcgagttttcggttgcagtttccgaggaagaactaggttcttattttgctgatatt
gtcactcaaatggctcttgatctaacgatgtctggagaatttcgtgctcgcctaattaaa
ctggcaagctggcttgtggagtgttctttagttccagtgaggttctttcaggagcggtgt
gaggaagaatttctctgggagtgtgaaatggtcaagataaaggctcaagaactgaaatct
aaagaggttagagtaaacacccgtctgctatatcaacagacaaagttcaaccttcttcga
gaagagagcgagggctacgccaagctggtgacccttctttgtgagggttctggggctttt
aactcatcatccccaacgattggcactattaagtcattgattgggcacttcgacttggat
ccgaatcgtgtttttgacattgtgctggagtgttttgaaatgcagcctcaaaatgatctt
tttttggatctgattccacttttccccaagtcacatgcttctcaaatcctaggcttcaaa
tttcaatattaccagcgactggaagttccaaattctataccttttgggctgtatcagctt
gcagctttgcttgtcaaggaagaccttgtcgatcttgatagcatatatgcacatttaatt
ccgaaggatgagcaagcgtttgaaaatttcagtgctgcttcaattaagcgtcttgatgag
gctaacaagatcgggaaaataaatcttgctgcaacgggaaaggaccttatggatgatgaa
aagcaaggagacgtgactgttgatctttatgctgcgatagacatggaaaatcaagctgtc
catgaatcagtctctgagctagagaacagccagaccttaggcttgctcacgggtttcctt
cttgtggatgattggtatcatgcgagtatcttatttgagcgtctctcacctcttactcca
gtggcatatggccagatctgtgatgagttgttcaggcttattggaaaatcaatgtcctca
gcatatgatagtgtccgtaaactgcatttagtcaactccgtgaatggccccacagcattg
gagacggcagatattttgagtagctctctagttttgctgcccaaagagctttttgaaatg
cttgcttgtgctggaccttatctatatcgtgatactttgttgttgcagaaggtttgtaga
attttgaaagcctactacctgtcagctcttgaactcattagcaagggggatgggactcca
gtatctattggcaatgtcagtgttgttcctcggttgcatttaagagaagcaaggtcaagg
attgaggaagcactggcatcatgtctgcttccttcattacagctagtacctgcaaatcct
gccattggccaagtgatttgggaagtgatgagtcttcttccatacgaggcgagatatcgt
ctttatggtgaatgggaaaaggatgatgagcggatacctatgattttggcagcaagacaa
actgctaagttggacactaggaggatcctgaaacggcttgcaaaggaaaatttaaaacag
ttgggtcgtatggttgctaagcttgctcatgccaatcccttgactgtacttcgaacaatt
gttcagcagattgaggcctaccgagatatgatcatgccagttgtggatgcatttaaatac
ttgacacagctggagtatgatgtcttggaatatgtagtgatagagcggttggctcaaagt
ggtcgtgagaagctcaaagatgatgggcttaacttgtcagattggcttcaatccctggct
tcattttgggggcatctgtgtaagaagtacccttcaatggagcttaggggactatttcaa
tatcttatcaaccaattaaaaaggggtcaaggaattgaacttcttctactacaggagttg
atacaacaaatggcgaatgttcaatacacggaaaacatgacagaggagcagctggactca
atggctggtggtgacactttgcgatatctggccacatcttatggcattagccgaaataat
aaggcacttattaaatccactaatagactgagagactccttggttccaaaggaagaacca
aagctggcaattcctcttctgctgctaattgcacaataccgttctttggttgttatcaat
gcggatgcaccttatataaaaatggtaagtgagcagtttgacagatgccatggggttctt
cttcagtatgtggatttcctttgtagtgctgtcagtccagcaactgcttatgcacaacta
gtacccactcttgatgatcttgttcatcaataccaccttgatcctgaggtggccttcttg
atctatcgaccagttatgaggcttttcaggcatcacaatagctccatctcatggccttta
tgtgatcatgatgagccaagtgatgctggtaacctagttttggatcttggaccatctcat
aattctgcgagatggcttgatcttcttgatacaattagaactatgttgccatcaaaggca
tggaacagcctttcgccggatctatatgcaactttttggggtctctccttgtatgatctt
tatgttcctcggaggcgctacgagtctgagattgctaaacagcatgctgctctaaaggct
ctggaagagatctctgataattcaggttctgcaattgcaaaaaggaagaaagataaagag
cggatacaggagtccttggatcggctcatgagtgagctccaaaaacatgaggagaatgtc
gcttctgtgcacaagaggcttgcaaatgaaaaagataagtggttgagttcttgtcctgat
acattgaagataaacatggagttcctgcagcgatgtatttttccacgatgtatcttcagc
atgccagatgctgtctattgtgcaatgttcgttcatactcttcactccttggggacacct
ttttttaacacagtcaaccatattgatgttttaatttgtaaaacgttgcacccaatgata
tgctgctgtactgagtatgaggctgctagactcggcagatttttgtttgaaacgctgaaa
attgcatacttttggaagagtgatgaatccgtttatgaacgtgaatgtggtaacatgccg
ggattcgcagtttattacagatatccaaatagtcaacgggttacatacggccaattcatt
aaggtgcattggaagtggagtcaaagaatcactcgactgttgatacagtgcttggagtct
gcagaatatatggaaattcgaaatgcactcataatgctgacaaaaatatccattgtattt
ccagttacaaggaaaagtggaataaacattgagaaacgagtggcgaagatcaaaggtgat
gaaagagaagatttgaaggttttagccactggcgttgcggctgctttggctgctagaaag
ccatcttgggtcaccgaagatgaatttgggatgggatatcttgaacttaaacctgcccca
tcagtggctccaaagtcttcaacaggtaatggttcaggaattggtgtttctcaaagtgaa
cccactgggggaagagttacctctgaagctcaacctttggattcaggcaattccctgaaa
gatcaagcgtgccgatcgaagcctattgatgggagatcagagaggccagaaagtgtttca
ggaagtgctaagaaaggtggttcaatggctaatggaccagatttgcagccaacaggcaca
caggtcggattattaaggttatcggagagtcaaaagcaggtagatgagtctttaagcaag
attgtggaagaaaatgtcgcaaaaggagtctcaaagtcgtccgctgacagtgagcaaaaa
aatgctgcaaaacgaggttcagctgcagttggttcaaagccacttaaacaagagcctaaa
gacgatactaagtcagctaaagttgggagaacaagtggtgcatctggaagcgagagagat
catataagtcatctgacagagggcagacaaattgggcaagctaatgtttcgtctggctct
gttactaatggtaatttagctcctccgtctaaaggcttggcttcattgacacgagttgag
attgaagctaatgatttgcggtcagaagttgggcccacaaagtcctctaatctaaagggt
gttttgagggatgatggtactgatctacctgatttatctcggcctacacattctcgttca
gctcattctcctcgacatgatgctggtgctaagcctattgagagacaacaaaaaaggaat
agtcctgcagaagaaccagataggctacacaaacggagaaaaggtgatcctgagatgaga
gatgttgaggtcgatgttcgattgacggatcgagagagaacagttgagcaaaaaatactg
gacaaatcctacccttccgaggtggataaggcagggactgaggaattagctttcagtttg
gttgctgataaacatgcagataggacaaaggagaaaactactgaaaaatatgagagagaa
tatagagaaagatctgagcgcaatgacaaacttcgcagtgatgatacttctgaaaagtca
agagccagatcaatggagcgatatggaagagagcattcagttgaaagagtacctgagcgg
aggattgataggggttttgatggccttaatgataaggccagggatgaaagaagcaaggat
gacagaactaaaccgcgttacaacgaagtatctagtgaaaaatctcatagtgatgatcga
tttcattgtcagaatttgccacctccgccccctttgccaccgcatgtggttccacaatct
gttaatgcaagtcgaagagatgaagatgttgaaagaagatttccgactgctagacatgct
caaaggctttctcctagacatgaagaaaaagaacgtcgacggtcagaggaaagcttgcta
actgcgcaagatgattccaggcgcagaagagaagatgaccttagagatagaaagcgtgaa
gaacgagagacatcgacgatgaaggtcgaagagagagaacgggaaaaagagaaggaaaag
gaaagagaacgagagagagatagagcaagcgtttcgaaagaggaaatagattcaactgca
gcgtcaaagagacggaaacttaaaagggaacatattcctggtggggaacctggtgagtat
acccctgttgctccacaacctccaatttccattggcatgtcgcagccgtatgatgctagg
gaaagaggagataggaaaggctcaatgattcagcgtccaacatactttgaggaaccagtt
atgaggatgcatgtgaaagaaccagcaagcaagatggcacgacgtgatgttgacccaata
tatgaacgtgactgggatgatgagaaaagacagagagttgaagcaaaacgccgacacagg
aaatga
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