Beta vulgaris (sugar beet): 104897021
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Entry
104897021 CDS
T03548
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
bvg
Beta vulgaris (sugar beet)
Pathway
bvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104897021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvg03019
]
104897021
03041 Spliceosome [BR:
bvg03041
]
104897021
03009 Ribosome biogenesis [BR:
bvg03009
]
104897021
03016 Transfer RNA biogenesis [BR:
bvg03016
]
104897021
Enzymes [BR:
bvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104897021
Messenger RNA biogenesis [BR:
bvg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
104897021
Spliceosome [BR:
bvg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
104897021
Complex C
U4/U6.U5 tri-SnRNP related factors
104897021
Ribosome biogenesis [BR:
bvg03009
]
Eukaryotic type
Pre-60S particles
Helicases
104897021
Transfer RNA biogenesis [BR:
bvg03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
104897021
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
DUF4047
ATPase_2
nSTAND3
DUF7491
Motif
Other DBs
NCBI-GeneID:
104897021
NCBI-ProteinID:
XP_010682135
LinkDB
All DBs
Position
6:complement(43542360..43560451)
Genome browser
AA seq
996 aa
AA seq
DB search
MTSIKRKSIEEENPTMESNPPPQKLLKEDNNNNNNNNNDTVACFHDVSYPDNYVPRSSTT
NSSSTSAPAKEFPFTLDPFQAEAIKCLEHGESVMVSAHTSAGKTVVASYAIAMSLRNKQR
VIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYRGSEITR
EVAWAIFDEVHYMRDKERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPC
HIVYTDYRPTPLQHYIFPSGGKGLYLVVDENAKFREDSFQKALSALAPAAEGEKKRENGK
WQKGVVVGKMGEESDIFKLVKMLIQRQYEPIILFSFSKRECELLAMQMAKMDLNGDDEKV
NIETIFWSAMDMLSDDDKKLPQVTNLLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKC
LFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDDRGICILM
VDEKLEPSTAKMMLKGSADSLNSAFHLSYNMLLNQLRCEDGNPENLLRNSFYQYQADRAI
PDLERQAKQLKEERNSIIIEKEESLKNYYSLIEQYKSLKEDVREIVFSPKYCLPFLQPGR
LVCIECSKTDEDLPSFSIEDNVSWGVIINFQRTKRVSEESKRPEDASYTLDVLARCMVSR
EGEGKRTTRIVPLKDPGEPIVVSVPLSQIYSLSTIRVIMSKDLLPLEARQNTLKKVSEVF
TRFSKEGIPLLDPEDDMKVQSSSYRKAVRRIEALESLFDKHEVAKSPLIKEKLKILHKKQ
ELGAKIKSIKKQMHASTALAFKDELKARKRVLRRLSYVTNDDVVELKGKVASEISSADEL
TLTELIFNGVFKDIKVEDMVALLSCFVWQEKLQDAQKPREELELLFVQLQDTARRVAKVQ
LECKVQIDVDNFVNSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEILQQ
LILAAKSIGETELESKFEDAVSTIKRDIVFAASLYL
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atgacttctataaagaggaaatcaatagaagaagaaaatccaacaatggagtccaaccca
ccaccccaaaaattgctgaaagaggacaacaataacaacaacaacaacaacaacgacact
gttgcctgttttcatgacgtatcttaccctgataattatgtccctcgttcttcaaccacc
aactcaagctctacttctgcacctgctaaggaattccccttcactctcgacccttttcaa
gctgaagctattaagtgtctcgaacatggcgagtctgttatggtgtcagcccatacctca
gctggaaaaacagttgtagcttcatatgctattgctatgtcattgcgcaataagcaaaga
gtgatatatacttcccctatcaaggctcttagcaaccagaaatatcgagaatttaaagaa
gagttttcagacgttggattgatgacaggggatgtcaccattgatcctaatgcttcatgc
ttggtgatgacaacagaaatctggcgaagtatgcaatatagaggatcagaaattacaaga
gaggtggcatgggcaatatttgatgaggttcactatatgcgtgataaggagcggggtgtg
gtatgggaagaaagcatagtgatggctccaaaaaattctcgatttgtgttcctttcagca
acagtacctaatgcaaaggagtttgcagattgggttgcaaaggttcaccagcaaccatgt
catattgtttatacagattatcgcccgacgccacttcaacactatatatttccttctggt
ggaaaaggcctgtacttggtggtggatgaaaatgccaaatttcgtgaagatagtttccag
aaagcgttgagtgccctagcccctgctgccgagggtgaaaagaagagagagaatggaaag
tggcaaaagggtgtggtggttggtaagatgggagaggaaagtgatatctttaagttggtg
aaaatgctcatacagcgtcagtatgaacctattatattgtttagcttcagcaaaagagag
tgtgaattgcttgcgatgcagatggcaaagatggatttgaatggggatgatgagaaagtg
aacatagaaactattttctggagtgcaatggacatgctatctgatgatgacaagaagctc
cctcaggttacaaatctgttacctctcttaaaacgtggaataggagttcatcattctggg
ttgctgccgattcttaaagaagtcattgaaattctgtttcaggaagggcttatcaagtgc
ttgtttgcaacagagacctttagcattggtctgaacatgcctgcgaagaccgttgtgttt
acaaatgtccgtaagtttgatggagataagttcagatggatatccagtggagagtacata
caaatgagtggccgtgctggtcggcgaggtattgatgaccgtggaatatgtattctgatg
gtagatgagaagcttgaaccttcaacagctaagatgatgcttaaaggaagtgctgatagt
ttgaacagtgcctttcatctaagctacaacatgcttttgaatcaattacggtgtgaagat
ggtaaccccgaaaatttgcttcgtaactcgttctatcaatatcaagccgatcgcgcaatt
cctgatttagagaggcaagctaaacaacttaaagaggagagaaattccattattattgaa
aaagaggaaagcttgaagaattattactcactaattgagcaatataaaagtttaaaggaa
gatgtgcgtgaaattgttttttctccgaagtattgcttacctttcttgcagcctggaaga
cttgtatgcattgaatgctcaaaaacagatgaagatctgccgtctttctccattgaagac
aatgtgagttggggtgtcattataaattttcaaagaaccaagagggtttctgaagaaagt
aaaaggccagaggatgcaagctacactcttgatgttcttgcaagatgcatggtgagcaga
gagggtgaaggaaagagaactactagaattgttccactgaaggatcctggagaacctatt
gtagtatctgttccactttctcagatatacagtttgagtaccatacgcgtgatcatgtcc
aaggaccttttgccattagaggctcgacaaaacaccttgaagaaggtttcagaagttttt
accagattttctaaggaggggattcctttgcttgatcctgaagatgatatgaaggttcaa
agcagttcatacagaaaggctgttcgtagaattgaagcattagagagtttgtttgacaag
cacgaagtggcgaagtctcctttaattaaggaaaaacttaagatattgcataagaagcaa
gaacttggtgccaagataaagtccattaaaaaacaaatgcatgcctctacggctttggca
tttaaggatgagctcaaagcaaggaaacgagttttgaggcggcttagttatgtcaccaat
gatgatgttgtggagttaaaagggaaggttgcctctgaaattagtagtgctgatgagttg
actctgacagaacttatatttaatggtgtttttaaagacatcaaggtagaagatatggtg
gccctgttgtcttgttttgtatggcaagaaaaacttcaagatgctcaaaaacctagagaa
gaacttgagctgctctttgtacaattgcaagatacagctaggagggttgcaaaagttcag
cttgagtgcaaggtgcaaatcgatgttgacaattttgtaaattcgttccggcctgatatt
atggaggcagtctatgcttgggcgaaaggatccaagttttatgagatcatggaaattacc
caggtatttgagggaagcttgattagagctatcaggagattggaagaaatccttcagcag
ctcattctcgcagctaaatctattggagaaaccgagcttgaatctaagtttgaagatgct
gtctccacgattaagagggatattgtctttgctgcatcgctatacttataa
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