Beta vulgaris (sugar beet): 104897852
Help
Entry
104897852 CDS
T03548
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
bvg
Beta vulgaris (sugar beet)
Pathway
bvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104897852
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvg03019
]
104897852
03041 Spliceosome [BR:
bvg03041
]
104897852
Messenger RNA biogenesis [BR:
bvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
104897852
Spliceosome [BR:
bvg03041
]
Complex B
Other components
Prp19-related factors
104897852
Complex C
104897852
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_15
TPR_19
ARM_TT21
NRDE-2
Motif
Other DBs
NCBI-GeneID:
104897852
NCBI-ProteinID:
XP_010683112
LinkDB
All DBs
Position
6:58378910..58389146
Genome browser
AA seq
917 aa
AA seq
DB search
MSIPRELYPSEDDLPYEEEILRNPFSLRLWWRYLVARTESPFKKRSIIYERALKALPGSY
KLWYAYLRERLELVRNLPITHSQYETLNNTFERALVTMHKMPRIWIMYLQTLTQQKLVTR
TRRTFDRAFCALPVTQHDRIWEPYLIFVGQRGIPIETSLRVYRRYLKYDPSHIEDFIEFL
ITSERWQEAAERLGGVLNDDQFFSIKGKTKHRLWLELCDLLTKHATEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRKLPEKARDVFEEGMMTVVTVRDFSVIFDAYSQFEESML
AYKMENLDLSDEEEEIGGEDEEEEEEDIRRDVELSVGKFEKKILKGFWLHDDNDVDMRLA
RLEHLMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTRQILTYTEAVRTVDPMKAVG
KPHTLWVAFAKLYESHKDLANARVIFDKAVQVNYKALDHLASIWCEWAEMELRHKNFKGA
LDLMRRATAEPSVEVKRRVAAEGYEPVQMKLYKSLKLWTFYVDLEESLGSLESTRAVYER
ILDLRIATPQIIINFAMLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYG
KNKLERARELFENAVETAPGECVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPASEKL
SMYEIYIARAAEMFGVPKTREIYEQAIQSGLPDKDVKTMCMKYAELEKSLGEIDRARAVY
TYASQFADPRSYPDFWSQWHEFEVQHGNEDTFREMLRIKRTIAASYSQTHFILPENMMQK
DEKVSLDKAVDVLRQAGAGEDEMAALERQLAPVDDDVPVKDKARTVGFVSAGHESQADDA
GKRNNVNQEEIELPEESDDEDVEPVEIAQKDVPSAVFGGLAKKREDPEKDEDGEEEAKGA
ADARLGALERLKRRKKE
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatccctcgcgaattatacccttcagaagacgaccttccatacgaagaagaaata
ctgagaaaccctttcagtttgcgactatggtggcgttatttggtcgcaagaaccgaatct
cccttcaaaaaacgctcaatcatctacgaaagagcactcaaagctttacctggaagctac
aaactctggtacgcttatcttcgtgaacgtcttgaacttgttcgtaatcttcctattaca
cattctcaatatgaaaccctaaataatacttttgaacgtgctttagttactatgcataag
atgcccagaatttggattatgtatttacaaaccctaactcaacaaaaattggttactcgt
actcgtcgaacctttgatcgagctttttgtgctttgcctgttactcagcatgatcgaatt
tgggaaccctatttgatttttgtaggccagaggggtattccaattgagacttcacttagg
gtttataggaggtatttgaagtatgacccatctcacattgaggattttattgagtttttg
attacttctgagaggtggcaggaggctgctgagagattaggtggggttttgaatgatgat
cagtttttttcgattaaggggaagaccaagcatcggctttggcttgaattgtgtgatctg
ttgacgaagcatgctaccgaggtttctgggttgaatgtggatgctattattaggggtggg
attaggaagtttacggatgaggtgggtaggttgtggacgtcgttggcggattattacatt
aggaggaagttgcctgagaaggcgagggatgtgtttgaggaggggatgatgacagtggtg
accgttagggattttagtgtgatttttgatgcgtactcacagtttgaggagagtatgttg
gcgtataagatggagaacttggatttaagtgacgaggaggaagagattggtggagaggac
gaagaggaagaggaggaggatattagaagggatgttgagctctctgtggggaagtttgag
aagaagattctgaagggattttggctccatgatgataatgatgtagatatgaggcttgct
aggttggagcatttgatggataggcggcctgagctagctaacagtgttcttcttcgacaa
aacccacataatgtggagcaatggcatcgcagggtgaagctctttgagggtaatccaact
aggcagatattgacctatactgaggcagtcaggactgtggatcccatgaaggccgtagga
aagcctcacactttgtgggtagcttttgctaagctttatgagagtcataaagatcttgct
aatgctagggtgatttttgacaaagctgtgcaagtgaattataaggcactggaccatctt
gctagcatttggtgtgaatgggctgagatggaattgaggcacaagaacttcaagggagca
ttggacctgatgcgacgcgcaacggcggaaccctctgttgaagttaaacgtcgagttgct
gctgaaggttatgagcctgtgcagatgaagctgtacaaatcattaaagttatggacattc
tatgtagatttagaggaaagtcttggttctttggagtccactcgtgctgtgtatgagagg
atattggatctaagaattgcaactcctcaaattattattaactttgcaatgcttctggag
gagcataagtactttgaagatgctttcagagtgtatgaaagaggtgtgaagatcttcaaa
taccctcatgtgaaggatatatgggttacgtatttatccaagtttgtgaagagatatggg
aagaataagttggaacgagcgagagagctctttgagaatgctgtcgaaacggctcctggg
gaatgtgtaaagcctttgtacctgcaatatgccaagttagaggaggattatggcttagca
aagcgtgcaatgaaggtttatgaccaagctactaaagctgttccagctagtgagaagttg
agcatgtacgagatctacatagctcgtgcagcagaaatgtttggtgtgccaaaaactagg
gagatatatgagcaagcaattcaatctggtcttcctgacaaagatgtgaagaccatgtgc
atgaagtatgctgagcttgaaaagagccttggggagattgatcgtgctcgtgcagtctac
acatatgcctcccagtttgcggatccaagatcttatcctgatttttggagtcagtggcat
gaatttgaggtccaacatggaaatgaagacaccttcagagaaatgctccgcattaaacga
actattgctgctagttacagccagacacatttcatacttcctgaaaatatgatgcaaaaa
gatgagaaggtaagccttgataaggctgtggatgtactaagacaagctggggctggtgaa
gatgagatggccgctctggaaaggcagttggctcctgtagatgatgatgttccagtcaag
gacaaagccaggacggtcgggtttgtcagtgctgggcatgaatctcaagctgatgatgct
ggtaaaagaaataatgtaaatcaggaggaaattgaactgccagaagagagtgatgatgaa
gatgtagaaccggttgagatcgcacaaaaggatgttcccagtgctgtttttggtggcttg
gctaagaagcgggaagaccctgagaaagatgaagatggggaggaggaggccaaaggggct
gctgatgcccgtcttggtgctcttgaaagattgaagcgtagaaagaaagaataa
DBGET
integrated database retrieval system
