Beta vulgaris (sugar beet): 104899093
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Entry
104899093 CDS
T03548
Name
(RefSeq) sm-like protein LSM4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
bvg
Beta vulgaris (sugar beet)
Pathway
bvg03018
RNA degradation
bvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104899093
09123 Folding, sorting and degradation
03018 RNA degradation
104899093
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvg03019
]
104899093
03041 Spliceosome [BR:
bvg03041
]
104899093
Messenger RNA biogenesis [BR:
bvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104899093
mRNA degradation factors
5'-3' decay
Lsm complex
104899093
Spliceosome [BR:
bvg03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
104899093
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
104899093
NCBI-ProteinID:
XP_010684532
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All DBs
Position
7:complement(21186583..21195002)
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AA seq
145 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEEKSRTDRKPPGVGRGRGRGREDGPGRQTKGIGRGIDDGG
RGAGGRGRSGPGGKPGGKVPGGRGR
NT seq
438 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctctgtcactactgaagacggcgcagggccaccccatgttggtggaattgaag
aatggggagacttataatgggcatttggttaactgtgatacatggatgaacattcatctt
cgtgaagtaatctgtacctctaaggatggagacaggttttggagaatgcctgaatgttat
atccggggtaatactatcaagtatctacgagtacccgatgaggtcattgacaaagtccag
gaggagaagagccgcacagataggaagcctcctggtgtagggcgtgggagaggaaggggt
agagaagatggccctgggcggcagacaaaaggcattggacgtggtattgatgatggaggt
agaggtgctggaggcagaggtcgcagtggccctggtgggaagcctggtggaaaagtacct
ggaggcagaggtcgatga
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