Beta vulgaris (sugar beet): 104899206
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Entry
104899206 CDS
T03548
Name
(RefSeq) THO complex subunit 5A
KO
K13174
THO complex subunit 5
Organism
bvg
Beta vulgaris (sugar beet)
Pathway
bvg03013
Nucleocytoplasmic transport
bvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104899206
09122 Translation
03013 Nucleocytoplasmic transport
104899206
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvg03019
]
104899206
03041 Spliceosome [BR:
bvg03041
]
104899206
Messenger RNA biogenesis [BR:
bvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
104899206
Spliceosome [BR:
bvg03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
104899206
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
104899206
NCBI-ProteinID:
XP_010684661
LinkDB
All DBs
Position
1:29175309..29202206
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AA seq
817 aa
AA seq
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MDAKMEDASASASAAVSTLEDIVVSPAMAAERVEKSPYDMLKESKTCVEEIVAKMLSLKR
DDDAKPELRELVTQMFLHFVSLRQANRNILTEEDRMKAETERAKAPVDSTTLQLHNLLYE
KSHYLKAIKACKDFKSKYPDIQLVTEAEFFSQAPEEFKGTAVSNDTAHNLMLKRLNYELF
QRKELCKLRELLEQKKKSLLETIANRKKFLSSLPSHLKALKKASLPAQNQLGLLHTKKQK
QLHAAELLPLPLYIIYSQFMAQKEAFGEHIELEIIGSLKDAQVFIRQQTCKDTGISSMQE
NSRIDDDVVDEEDDGQRRRKRPRKVAGKENIETAGIYQPHPLRIILHVCDDEVSDPKPPR
LVTLKFEYLYKLNVVCVGVEGSDQEPENNIICNLFPDDKGLELPQQSAKLLSGNGAEFDE
TRTMRPYKWAQHLAGIDILPEVSPALTSNESSKSEFGKDAVISGLSLYRQQNRVQTVVQR
VRLRKKAQLALVEQLDSLTNLTWPYLNCQSVPWATQEHLCFVRRWLPVGSSLNQDASLPR
ADIDQDRDTLDVNETVRAGSSKEEIGIVTEDGELPSLIPPAGVTDDISTADLNQESGTNH
FKRKTLISKSFTIPVKTTRSHSFGHYDDDTDLILDSESEVDESAKTERENKCAVVEGISW
VDYGVKDFNLMLTNKRYVEEGNVDLEAKISISLEYPLRPPLFRLTLHSQSPGGNSSSGDH
VWYNELRAMEAEVNLHILKMLPSDQGNWILSHQVHCLAMLFDVYLNEASQPLEGRKVSNA
IDSLCKPVSALKARSFRGRDRRKMIPWKDMKCNPGCP
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atggatgctaaaatggaagacgcctccgcctccgcctccgccgcagtatcgacgttagaa
gatattgtagtttctcctgcaatggcggccgaaagggtagagaaatctccgtatgatatg
ctaaaagagagcaagacttgtgtggaagaaatagtggccaagatgctttctctcaaaaga
gatgatgatgcaaaacctgaacttcgcgagctagtcactcagatgttcctccactttgtc
tctctccgccaggcaaatcgtaatatcttgactgaagaagatcgtatgaaagctgagact
gaacgtgcgaaagcacctgtggattcgactactttgcagcttcataatttgttgtatgag
aagagccactacctcaaagctataaaggcatgcaaagactttaaatccaagtatcctgat
attcaacttgttactgaggctgagttttttagtcaagctcctgaagagttcaaaggaact
gctgtatcaaatgatactgctcacaacttgatgcttaagaggcttaattatgagcttttc
cagagaaaagagctttgcaagcttcgtgagttgctcgaacagaagaagaaaagtctcctg
gagaccattgccaacagaaagaagttcttgtcaagtctaccctcgcatctcaaggctttg
aagaaagcatcattgcctgcacaaaatcaactaggacttttacatacaaagaaacaaaaa
cagctacatgcagcagagttgcttccgctgccattgtatattatttactcacagttcatg
gctcaaaaggaagcttttggggagcatatcgagctggaaattattggaagcttgaaagat
gctcaagtctttatccggcagcaaacatgtaaagacactggcatatcatccatgcaggag
aattcgcggattgatgatgatgtagtggatgaggaagatgatggccaaaggaggagaaaa
cggcccagaaaggtggctggcaaggaaaatattgagacagctggaatatatcaacctcat
ccgcttagaatcattctccatgtgtgtgacgacgaggtttctgatccaaagcctcccaga
cttgttactttgaagtttgagtatctgtataagctgaatgttgtatgtgtgggcgttgag
ggttctgatcaagagcctgaaaataatataatttgcaatttattccctgatgacaagggc
cttgaactacctcagcagtctgctaagcttctctcgggtaatggagcagagttcgacgaa
acacggactatgcggccatataagtgggcccagcatttggcaggaattgatattttgccg
gaggtgtcccccgcactgactagtaatgaatcttctaagtctgaatttggtaaagatgct
gttatctcaggactttccctctatcggcagcaaaatcgagtgcagacggtggtgcaaaga
gtaaggttgaggaagaaggctcagcttgcacttgtggaacagcttgattcacttacaaac
cttacatggccctatctgaactgtcaaagtgttccgtgggccacacaggaacacctgtgc
tttgtgcgcaggtggttacctgtaggatcctctcttaaccaagatgcttctttacctaga
gctgacattgatcaagaccgtgatactttggatgttaatgagaccgtaagagctggttcc
tctaaggaagagatagggattgtaacagaagatggggagcttccatctttgattcctcca
gcaggtgtgactgatgatatttctactgctgatctgaatcaagaatcaggtaccaatcat
tttaaaaggaagacacttatctcaaaaagtttcacaattcctgtcaaaactaccagaagc
catagttttggacactatgacgatgatacagacctcatattggatagtgaaagtgaagta
gatgagtctgcgaaaactgaaagggaaaacaaatgtgctgttgtcgaggggatatcatgg
gtggattatggagttaaagactttaatctaatgttaaccaataaaagatatgtggaagag
gggaatgtcgaccttgaagcaaagattagtataagcttggagtatccactcaggccccct
cttttcagattgactttacactctcaatctcctggtggaaacagttcatccggtgatcac
gtatggtacaatgaacttcgtgccatggaagctgaggtcaatcttcacatactaaagatg
ttaccttcggatcaaggaaactggatcttgtctcatcaagtgcattgtcttgccatgctc
tttgacgtctacctaaacgaggcttctcaacccttagaaggaagaaaggttagcaatgca
attgatagcttgtgcaagcctgtcagtgccctcaaagccagatctttcaggggaagggat
cgtaggaaaatgataccgtggaaggatatgaagtgcaatcctggctgtccttga
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