Beta vulgaris (sugar beet): 104899398
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Entry
104899398 CDS
T03548
Name
(RefSeq) pre-mRNA-processing factor 39
KO
K13217
pre-mRNA-processing factor 39
Organism
bvg
Beta vulgaris (sugar beet)
Brite
KEGG Orthology (KO) [BR:
bvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bvg03041
]
104899398
Spliceosome [BR:
bvg03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
104899398
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_19
TPR_12
UTP6_C
NRDE-2
TPR_7
DNAX_ATPase_lid
TPR_10
Motif
Other DBs
NCBI-GeneID:
104899398
NCBI-ProteinID:
XP_010684876
LinkDB
All DBs
Position
7:29062457..29073169
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AA seq
815 aa
AA seq
DB search
MADSETVVAQSIMGEMPNNHQSSDFVNTKPDGPDDAVSAVPAEGSADTIYASTTSDAGKS
HVGPITAAQEATAASSEEMRPIIGGEGGNETATSMELNQVAVHDGSANGMIPNLANGDVT
STHEVQATIADQQFEDGAALSAEEERLWNIVKANSLDFNAWTSLIEETERVAQDNILKIR
KVYDAFLAEFPLCYGYWKKYADHEARFGDINKVVEVYERAVQGVTYSVDIWLHYCAFTIT
TYGDPDTVRRLFERALAYVGTDYLSYPLWDKYIEYEYTQQQWAHLAMIYTRILENPNQQL
DRYFTSFKELAGSRPLAELRTPEEAAAATTTAAVPNSDTDVEGSEKEVNPDVMEESSKPV
NSGLTEAEDLEKYIAIREEIYRKAKEFDSKIIGFETAIRRPYFHVRPLNDAELENWHHYL
DFTEREGDINKIVKLFERCLVACANYPEFWIRYVLCMEGSGSLDLAENALARAAQVFVKR
QPEIHLFAARFKEQHDDVPGARAAYQLVHSEISPGLLEAIIDHANMERRLGNMEDAFSLY
EQAIAIEKGKEHSQTLPLLFAQYSRFVYLVYGNAEKARDILVGALDHVQLSKPLLEALIY
LESIQSLPKRIDSIDSLVDKYLAPTADDSDAAIILEKEELSSIYLEFLGLFGDVQSIKKA
KDRHARLFLRHRRPSESRKRNADDLLTSDKAKIAKSYSGVPSTPPSAYPNAQHQWASGYG
SQTQPWPQATQTTGQAYNPAYAQQTAYSGYYGGSYTPQPAPAPVPQTAAYGAYPSTYPAQ
AYPQQSYVAPVAPVAAATAPAQPGAVPQAYYGTYY
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atggcggatagtgaaacagttgttgctcaatcaattatgggtgagatgcccaataatcat
caatccagtgactttgtgaatactaagccagatggtcctgatgatgctgtgagtgctgtg
cctgctgaaggttcagctgatacaatatatgcaagcactacttcagatgccggaaagtca
catgttggtccaattaccgctgctcaagaagctactgcagcttcttctgaggaaatgagg
ccgattattggaggagaaggtggaaacgaaaccgctacgtccatggaattgaaccaggtg
gctgttcatgatggaagtgcaaacgggatgatacctaatcttgcaaatggagatgtaact
agcactcatgaggtgcaagccacgatagctgatcaacagtttgaggatggtgcagcttta
tctgctgaagaagaacgtctatggaatatagtcaaagctaattctttagattttaatgca
tggacgtcactgattgaagagacagaaagggtcgctcaggacaatatcttgaaaattaga
aaagtttatgatgcttttcttgcggagttccccttgtgttatggttattggaagaagtat
gctgatcatgaagcacggtttggagatattaacaaagttgtggaggtgtatgaacgagca
gttcaaggagtgacgtattctgttgatatttggttgcactattgtgcattcacaattacc
acatacggagatcctgacactgtaagaaggctgtttgagcgagcattggcatatgttgga
acagattacttgtcgtaccccctctgggataagtatattgagtatgaatatacgcagcaa
caatgggcacatcttgccatgatatatactaggatattggaaaatccaaatcaacagttg
gatcgctattttacgagtttcaaggagttagctggcagtcggcctctggcggagctaagg
actcctgaagaagcggcagcagcaacaactactgcagctgttcccaactcggatacggat
gttgaaggatctgaaaaggaggttaatcctgatgtaatggaagagtcttctaaacctgtt
aattctggcttaacagaagccgaagacttggaaaagtatatcgcaattcgagaagagata
tataggaaagctaaggagttcgattctaagatcattggttttgaaacagctattagaagg
ccgtatttccatgtaaggcccttgaatgatgcagaactagaaaattggcatcactacctg
gatttcaccgaaagagaaggggacatcaacaagatcgtcaagctatttgaaagatgccta
gtagcatgtgctaattatcccgaattttggataagatacgttttatgtatggaaggaagt
ggaagcctcgatcttgctgaaaatgcacttgctcgtgctgcccaagtttttgtgaagagg
caaccggagattcacctttttgctgcccgcttcaaagaacaacatgatgatgttcccgga
gctcgtgctgcctatcaacttgtgcacagtgagatctctcctgggcttttggaggctatt
attgaccatgctaacatggaacggaggctgggaaatatggaggatgctttctcattatat
gaacaagctattgccattgagaaaggaaaagaacattcgcaaacattaccattgctcttc
gcgcaatattctcgttttgtttacttggtttatggaaatgcagaaaaagctcgagatata
cttgttggagcacttgatcatgtccagctatcaaagccacttttggaggcattaatctat
ctggaatctatacaatcgctcccaaagagaattgattctatcgattccttggttgataag
tacctggctccaactgctgatgattctgatgctgcaattatacttgaaaaagaagaattg
tcaagcatatatttggagtttcttggtctttttggtgatgtacaatccataaagaaggct
aaggatcgacatgctaggttgttcttgcgccatagaagaccatcagaatcgagaaagcgc
aatgctgatgatttattaacttcagacaaggcaaagattgcaaaatcttactctggtgtt
ccctcaacacccccatcagcatatccaaatgctcaacatcaatgggcatcaggctatggg
tcgcaaactcaaccttggccacaagccactcagaccacaggacaggcatataacccggcc
tatgcccaacagactgcatatagcggatactatggaggcagctatacccctcaaccagcg
cctgcgccagtacctcaaactgctgcttatggtgcttatccttcgacttatccggcacag
gcttaccctcaacaatcttatgtggcaccggtggcaccagtagctgcggctacagctcca
gcacaacctggtgctgttcctcaagcttactatggtacttactattga
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