Beta vulgaris (sugar beet): 104900014
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Entry
104900014 CDS
T03548
Symbol
LOC104900014
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11 isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
bvg
Beta vulgaris (sugar beet)
Pathway
bvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104900014 (LOC104900014)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvg03019
]
104900014 (LOC104900014)
Enzymes [BR:
bvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104900014 (LOC104900014)
Messenger RNA biogenesis [BR:
bvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
104900014 (LOC104900014)
mRNA degradation factors
3'-5' decay
Ski complex
104900014 (LOC104900014)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
Ski2_N
ResIII
AAA_22
DUF1922
Motif
Other DBs
NCBI-GeneID:
104900014
NCBI-ProteinID:
XP_010685630
LinkDB
All DBs
Position
7:57149920..57169120
Genome browser
AA seq
1348 aa
AA seq
DB search
MDRIPVGNDLAFRVGLTGHSGHLYIEPLPPVEAHNPLRDLPDFVLPPAFPEETSESIKEF
IEEKYLTPRLDPDEFSPEKAGRDWDFDWFSKAKIPVEPSLPRTAVFPEWELPFRRSKQGK
WEPRSVQLEISELIAGAEDSGAFPRITGPAKDFVRGSINSRPFHPGGIEGSQSLPRVVPD
GALNGDWIREVLEGGPAEKVPPSFKQGMDLGNLKAYPSSWNVTKCQVTPKAVSDEKQSTL
SLQFDDLFKKAWEDDIAENDVSDGHESEADNNESEIQVTEVEVEGDIPDVELSELDKILS
VDSAALDLKADVKHEEGDKQRKESWAIRESNDGIADRFHELVPDMALEFPFELDRFQKEA
IYYLERGDTVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFCGKFD
VGLLTGDISLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDAERGVVWEE
VIIMLPRHINFVLLSATVPNTIEFADWIGRTKQKTIRVTGTSKRPVPLEHCLFYSGELYR
ICENDTFLTQGLKAAKDAHKKKNSNTARSGSVMHSGPAAGSGGANAQNRDNSSRGRQKHS
GSRNTGSFYETGSGNFTSGSQTHLGMRRSDASLWLQLVTKLSKNSLLPVIIFCFSKNRCD
RSADSMTSIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQILRVQSLLLRGIGIHHAGLL
PIVKEVIEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRKFDGKEYRQIIPGEYTQM
AGRAGRRGLDKFGTVIIMCRDDILEERDLKHVIVGHPTRLESQFRLTFIMILHLLRVEEL
KVEDMLKRSFAEFHAQKKLPEKQQLLMLKLAQPTKTIECIKGEPAIEEYYEMYAEAEMYL
NQITEGVMQSHVANQFLVPGRVVVVKSQTSQDHLLGVVVKAPSASIKKYIILVLKPDLPP
IMQSSSGSGATLEKGSSKSDEGFFVLPKSKRALDDEYYSAATSRKGSGVINITLPYQGVA
AGVTYEVREVDNKEFLCICNCKIKIDQVRLLEDVSAAAYSKTVQQLSDLKSSGSKYPPAL
DPLKDLKLKDVDLVQAYYKWNKLLQKMVANKCHGCIKLDEHMKLVKDIFKHREEVNELKF
QMSDKALQQMPDFQGRIDVLKAIGCIDDDLVVQIKGRVACEMNSGEELICTECLLENQLE
DLEPEEAVAVMSAFVFQQKNTSEPSLTPKLSAAVQKLYDTAIRLGELQANFQLPVSPEEY
ARENLKFGLVEVVYEWAKGTEFADICELTDVPEGLIVRTIVRLDETCREFRNAAAIMGNS
ALYKKMEAASNAIKRDIVFAASLYITGV
NT seq
4047 nt
NT seq
+upstream
nt +downstream
nt
atggatagaataccagtaggaaacgatttggcatttcgggtcgggcttacgggccacagc
ggccatctttatatcgagccgcttcctcctgttgaggcccataatcctcttcgcgaccta
cctgatttcgttcttccacctgcctttcctgaggaaacaagcgaatctatcaaggaattt
atagaggaaaagtatttaacaccgcgattggaccctgatgagttttctcctgaaaaagct
ggaagggactgggattttgactggttcagtaaggccaaaatacccgtggagccatcatta
cctcggacagctgtgtttcctgaatgggagctaccatttaggcgctcaaagcaaggaaaa
tgggagcctcgatcagtgcagctggagatatcagaactgattgcaggagcagaggactct
ggtgctttcccacgaattacaggacctgcaaaggactttgtgagagggagcattaacagt
cgcccttttcatccaggtgggatagagggatctcaatctttgccaagggttgtacctgat
ggtgctttgaatggtgattggatacgtgaggttcttgagggtggtccggctgagaaagtt
cctccaagctttaagcaaggaatggatctgggcaatctcaaggcatatccttcttcatgg
aatgtgactaagtgccaagttactccgaaggctgtatcagatgagaagcagagtacactg
tctctgcagtttgatgacttgttcaagaaagcatgggaagatgatattgctgaaaacgat
gtatctgatggtcatgaatcagaagctgataacaatgaatcagaaatacaagtcactgaa
gttgaagtcgaaggtgatattccagatgttgaactatcggaattagataaaattttgtca
gtggactctgcagcattggatttaaaggcggacgtaaagcacgaagaaggtgacaaacag
cgtaaagagtcttgggctattcgtgaaagcaacgatggtatcgcagatcgttttcatgaa
cttgttcctgatatggctctcgagtttccattcgaactagataggttccagaaggaggct
atctactatcttgaacgaggggatacggtttttgtggcagctcatacatcagctggaaag
acagtcgttgcagagtatgcatttgcattggcgtcaaagcattgtactagagccgtgtac
acagctccaattaagacaatcagcaatcagaaatacagagatttctgtgggaaatttgat
gtaggtcttcttactggtgatatcagcttgaggccagaggcctcctgtctcatcatgact
actgaaatattgaggtcaatgttgtacagaggtgctgatataatccgggacatagaatgg
gtcatatttgatgaagtgcattatgtcaatgatgccgaaagaggtgttgtctgggaagaa
gttataataatgcttccacggcacattaattttgtcctcctctctgccacagttccaaat
acaatagaatttgccgactggattggcagaacaaagcagaagaccatccgtgttactggg
acctcaaagagaccagtcccgttggagcactgcctgttttactccggagaactttacaga
atttgtgagaacgacacttttctaactcaaggtctaaaagcggccaaagatgcacacaag
aaaaagaattcgaatacagccagaagtggctctgtaatgcattcaggtcctgcagcaggt
tctggtggagcgaatgctcagaatcgtgataattcttcccgtgggagacaaaagcattct
gggtcgcgcaatacggggagcttctatgagacaggttcagggaactttactagtggaagc
cagacccatttgggcatgagaagatcagatgcttctttatggttgcaacttgtcaccaaa
ctttcaaaaaattcacttttaccagttatcatattttgcttttcaaagaaccgttgtgat
aggtcggctgatagtatgacaagtattgacctcacaagtagttcagaaaaaagtgaaatc
cgtgttttctgtgacaaagctttttcacggctgaaggggtctgacagaaacctgcctcag
attctcagagttcaaagtcttcttcttagaggaatcggtatccatcatgctgggcttctc
ccgattgtgaaagaagttattgaaatgcttttttgccgtggtgtaatcaaggttttattt
tcaaccgagacatttgctatgggtgttaacgctcctgccagaacggtggtttttgatact
ctaagaaagtttgatggaaaagaatatagacagataattccgggtgaatatacgcaaatg
gctggccgggcaggcagaagagggctcgataaatttggaactgttatcataatgtgtcgt
gatgatattctggaagaaagagatttgaaacatgtcattgttggacatcccaccagactt
gaatctcagttccgactaacttttattatgattttgcatctactccgtgttgaagaattg
aaggtagaagacatgttaaagagaagctttgctgaatttcatgctcagaaaaaacttcct
gaaaaacaacaacttctgatgctaaagcttgcacagcccacaaaaacaattgaatgcata
aaaggtgaaccagctattgaggaatattatgaaatgtatgcggaggctgaaatgtatctg
aaccagataacggagggtgtcatgcagtctcatgtcgcaaatcaatttcttgtgcctgga
agagtggtggttgttaaatctcaaacgtctcaggaccatttacttggggtggtggtgaaa
gcaccttcagccagcattaagaagtacattattttggtgctgaaacctgatttgcctcca
ataatgcaatcatcctctggtagtggtgcaacccttgagaaaggaagtagcaaatctgat
gaaggtttttttgtgttgcctaagtcaaaacgtgccttggatgatgaatattattctgct
gccacttctcgcaaaggatctggtgtaatcaacattacattgccttaccagggggtggct
gctggtgtgacttatgaagttagagaagtggacaataaagagtttctttgcatctgcaat
tgcaaaataaagattgaccaagttcgccttcttgaagacgttagtgctgctgcctattca
aaaactgttcagcagctttctgatctgaaatccagtgggagtaaatatcctccagcgtta
gatcctttgaaggatctgaagctgaaagatgtggatcttgttcaagcgtactacaaatgg
aacaagctattacagaaaatggttgcgaacaagtgccatggatgtataaaattggatgag
catatgaagttagttaaggatattttcaagcacagagaggaagtcaatgagttgaagttt
caaatgtctgacaaagcacttcaacaaatgcctgactttcagggtcggatagatgttctc
aaggctattggttgtatagatgatgaccttgtagttcagatcaaaggccgtgttgcttgt
gaaatgaactctggagaggaacttatatgcaccgagtgtttgttggagaatcagttagag
gacctggaaccagaagaagcagttgccgtaatgtcagcatttgtttttcagcagaagaat
acttctgagccttcattaacacccaagctatctgctgcagtacaaaaattatatgatact
gctatcagactaggggaattacaggcaaactttcaactcccagtaagccctgaggagtat
gctcgagaaaatctcaagtttggtcttgttgaagtggtttatgaatgggcaaagggcaca
gagtttgctgatatatgtgagctaaccgatgttcctgaggggttgatagtgaggaccatt
gtccgacttgatgaaacatgtcgagaattcagaaatgctgcggctattatgggaaactct
gctttgtacaaaaaaatggaagctgcttcgaacgctataaagcgagacatcgtctttgca
gctagcttgtacatcacaggagtttag
DBGET
integrated database retrieval system
