Beta vulgaris (sugar beet): 104900371
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Entry
104900371 CDS
T03548
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
bvg
Beta vulgaris (sugar beet)
Pathway
bvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104900371
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bvg03041
]
104900371
03009 Ribosome biogenesis [BR:
bvg03009
]
104900371
Enzymes [BR:
bvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104900371
Spliceosome [BR:
bvg03041
]
Complex A
U1 snRNP components
U1 related factors
104900371
Complex B
104900371
Ribosome biogenesis [BR:
bvg03009
]
Eukaryotic type
Pre-60S particles
Helicases
104900371
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HAD_Pex22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
104900371
NCBI-ProteinID:
XP_010686087
LinkDB
All DBs
Position
7:44044457..44052385
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AA seq
502 aa
AA seq
DB search
MSRYDSRSTDPTSYRDRRSDYGASTGSEYGGGGRIGAPAPRRDSSPQRKLDLDGLTPFEK
NFYVETPSIAAMTDEEVAQYRRVRDITIEGRDVPKPVKTFSDVGFPEYVLEEVKKAGFVE
PTAIQAQGWPMALKGRDLIGLAETGSGKTLAYLLPAIVHVNAQPILSHGDGPIVLVLAPT
RELAVQIQQEATKFGASSRIKNTCIYGGVPKGPQVRDLNKGVEIVIATPGRLIDMLESNH
TNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLHN
AYKVIIGSPDLKANHAIRQIVEIVSENQKYKKLVDLLEDIMDGSRILVFMDTKKGCDQIT
RQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKFVINYDF
PGSLEDYVHRIGRTGRAGATGTAYTFFTAANARFAKELIAILEEAGQKVNPELAAMGKGA
PTPLAGGYPERRSRYNTGRSWS
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgctacgattctcggtctactgatcctacttcctaccgcgaccgtcgcagtgat
tacggagcatcgacaggtagtgaatatggcggcggaggtcgaattggagctccggcgccg
agaagagattcctcgcctcaaaggaaattggatttagacggattgacgccttttgagaag
aatttctacgtggaaacaccctctatcgctgccatgactgacgaagaggttgctcagtat
aggagagttagggatatcacaatcgagggccgtgacgtccccaagcctgttaaaaccttc
tccgatgtcggcttcccagagtatgttttagaagaggttaagaaggctggattcgttgaa
cccacagctattcaagctcaaggatggccgatggccctaaagggtcgagatcttattggt
cttgctgaaactggatcagggaaaacgcttgcctacttgctacctgctattgtccatgtc
aatgctcagcccattctatctcatggtgacggtcccattgtattagttctcgctcccact
agggaacttgctgtacaaattcaacaagaagccactaagtttggtgcttcatcaaggatt
aagaatacctgcatctatggcggggttcctaagggacctcaagttcgtgatctcaataaa
ggtgttgagatagtaattgcaacacctggaaggttgattgatatgttggaatccaaccac
actaatttgcgtagggtcacctaccttgtcttggatgaggcagatcgaatgctcgacatg
ggctttgaacctcaaattcgcaaaattgtgtctcagattcgaccagatcgtcaaacgcta
tactggagtgccacttggccaaaggaagttgagcaacttgctaggcagtttctacataat
gcatataaggtgatcattggctctccagacttaaaagctaaccacgcgatccgtcagatt
gtggagattgtctctgagaatcagaagtataagaaactggtggatctgctggaggatata
atggatggaagtcgaattttggtatttatggacactaaaaagggatgtgatcagattact
cggcagcttcgcatggatggttggcctgctctttcaattcacggggataagagccaagca
gaaagggattgggtgctgtcagagtttaaatctggcaagagtcctataatgactgctaca
gatgttgcagctcgtggcctagatgtgaaagacgtaaaatttgtgataaactatgatttc
cctggttcacttgaagactatgttcaccgtattggtagaacagggagagctggggccact
ggaacagcatacacttttttcaccgctgcaaatgctcgatttgcgaaggaacttattgcc
attctcgaggaagctggacagaaggttaatcctgagctggctgctatgggcaaaggtgcc
ccaactcctttagctggtggttaccctgaaaggaggagccgctacaatacgggtcggtca
tggagctaa
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