Beta vulgaris (sugar beet): 104901189
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Entry
104901189 CDS
T03548
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
bvg
Beta vulgaris (sugar beet)
Pathway
bvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bvg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104901189
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bvg03021
]
104901189
03019 Messenger RNA biogenesis [BR:
bvg03019
]
104901189
Transcription machinery [BR:
bvg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104901189
Messenger RNA biogenesis [BR:
bvg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
104901189
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_2
zf-CCCH
Torus
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
104901189
NCBI-ProteinID:
XP_010687042
LinkDB
All DBs
Position
8:complement(14268470..14299969)
Genome browser
AA seq
680 aa
AA seq
DB search
MEDTEGGLSFDFEGNLDAAPNIPTASNPVIQPDPNAAPSSGPAAPSPPADPASGQGNRRS
FRQTVCRHWLRSLCMKGDSCGFLHQYDKSRMPVCRFFRLYGECREQDCVYKHTNEDIKEC
NMYKLGFCPNGPDCRYRHAKQPGPPPPVDEVLQKIQQLTSYSYGASNRFFQQRNTNYSQQ
ADRSQFPQGANSTNQGAVPKPTATESSNMQQQLQQLPLAGQDQLQNLPSNPSNQTGRIAT
PLPQGLTRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSVEHVILVFSVNRTRH
FQGCAKMTSKIGETAGGGNWKHAHGTAHYGRNFSVKWLKLCELTFNKTRHLRNPYNENLP
VKISRDCQELEPSVGEQLASLLYLEPDSELMATLSAAESKREEEKAKGVDIENGAENPDI
VPFDDNEEEEEEEESEEEDESFGQAPGLAIQGRGRGRGMMWPPNFPMGRGVRPMQGMRAF
PPGMMGVDGFTYGPGPDGFPMPDPFGMAPRPFMPYGPRFSGDFTSPAPGMMFPGRPSQPG
GVLPGGGFGMMMGPGRAPFMPGGMGMGGRGGRPMGMPPIFPPQPGPPQGGNRGPKRDLRG
PGNDWGETFGSGPEQGKLQDMGGGRGGDPQYQQGTEKIVSCNNVTNDESESEDEAPRRSR
HGEGKKKRRSLDGDVHALDP
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggaagacacagaaggcggtttaagtttcgacttcgaaggcaacctggacgcagccccg
aatattccgactgcatcgaacccggtgatccaacccgacccaaatgctgccccgtccagc
ggacctgccgctccatctccgcccgctgacccggcatcgggccaaggcaaccgccgcagc
ttccgccaaaccgtatgccgacattggcttcgtagcctctgtatgaagggggattcatgt
ggctttcttcaccaatacgacaagtctcgaatgcccgtctgccgattctttagactatat
ggcgagtgtcgggagcaggattgtgtttataagcacactaatgaggatatcaaggagtgc
aatatgtacaaattgggattttgtccaaatggcccagactgtcgttaccgacatgcgaag
cagcctggccctccgcctcctgttgatgaagtccttcagaagattcagcaactgacttca
tacagctatggtgcctcaaatagattttttcaacaacgcaatacaaattattctcagcaa
gcagacagatcccagtttccacaaggtgctaacagcacaaatcaaggtgcagtccccaaa
cctacggcgacggagtcttccaacatgcaacaacaattacaacagctgcctttggctggc
caggaccaactacaaaatcttcccagtaatccatctaatcaaacagggaggatagctact
ccactgcctcaagggctaactaggtattttattgtgaagagctgcaatcgtgaaaacttg
gagttatcagttcaacaaggtgtatgggctactcagagaagcaatgaagccaaattgaat
gaagcttttgattctgttgagcatgttatcttggtcttttctgtcaaccgtactcgtcat
tttcagggttgtgcaaagatgacgtctaaaattggtgagactgctggtgggggtaactgg
aagcatgcacatgggacagctcattatggcagaaatttctctgttaaatggttaaagtta
tgtgagctaactttcaataaaactcggcatttgaggaacccgtacaatgagaatttgcca
gtgaagattagtagagattgccaggagctcgaaccttctgtcggggagcagttggcttcc
ttactttatcttgaaccagacagtgaacttatggcaactctctcagcagctgaatccaaa
cgtgaggaggaaaaagctaaaggagtcgacatagaaaatggagctgagaatcctgacata
gttccatttgacgacaatgaagaggaggaagaagaggaagaaagtgaagaagaagatgag
agttttggccaggcacctggacttgctattcaaggcagaggaaggggaagaggaatgatg
tggcctccaaactttccaatgggtcgaggtgttcgtcctatgcaagggatgagagccttt
ccccctggcatgatgggggtggatgggttcacatatggacctggacctgatggctttcca
atgcctgatccttttggcatggctcctcgtcctttcatgccttatggtccaaggttctct
ggtgatttcacgagtcctgcacctggtatgatgtttcctggtagaccttcacaacctgga
ggtgttcttcctggtggtggttttggaatgatgatgggtcctgggcgtgctcctttcatg
ccaggaggaatgggtatgggagggagaggtggtcgaccaatgggtatgcctcctattttt
cctccccaacctggacctcctcaaggtggcaatcggggtccgaagagagatctgagagga
cctggtaatgattggggtgaaacatttgggtcaggtccagagcaagggaagttgcaggat
atgggtggtggacgtggtggtgaccctcaatatcaacaaggtactgagaaaattgtctca
tgtaacaatgtaacgaatgatgaaagtgaaagtgaggatgaggctcctaggaggtcaaga
catggtgagggaaagaagaaacgccgaagcttggatggtgatgttcatgctttagaccca
tga
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