Beta vulgaris (sugar beet): 104902089
Help
Entry
104902089 CDS
T03548
Name
(RefSeq) DNA excision repair protein ERCC-8
KO
K10570
DNA excision repair protein ERCC-8
Organism
bvg
Beta vulgaris (sugar beet)
Pathway
bvg03420
Nucleotide excision repair
bvg04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
bvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
104902089
09124 Replication and repair
03420 Nucleotide excision repair
104902089
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
bvg04121
]
104902089
03400 DNA repair and recombination proteins [BR:
bvg03400
]
104902089
Ubiquitin system [BR:
bvg04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
104902089
DNA repair and recombination proteins [BR:
bvg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
104902089
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WDR55
EIF3I
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_TEP1_C
NBCH_WD40
ANAPC4_WD40
Beta-prop_SPT8
WD40_RFWD3
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_Nup120_160
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
WD_LRWD1
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
104902089
NCBI-ProteinID:
XP_010688062
LinkDB
All DBs
Position
1:33542615..33549606
Genome browser
AA seq
458 aa
AA seq
DB search
MLWKEITSRDEGRLRPNSFSRRLRSRRISSLQLSNFKEFVSPHRGAINSLQVDLTEGRYL
LSGASDASAAVFDVQRVSGFEDGGLVAKHKCLFVIDKQHQQGHKYAISSATWYPIDTGLF
VTGSYDHHINVWDTNTTQVVMNFKMPGKVYKTAMSPIATSHMLIASGTEDVQVRLCDIAS
GAFSHTLSGHRDGVMAVEWSTSSEWVLMTGGCDGAIRYWDIRRAGCFLVLDQSKSQLGRR
PPLLERSVADKAATSKATGQSSSAKNRLQQKKVSLGNDTKLSAVSRMPSQLKGGYSKQRR
HPGMMSSQDHATAHYGAVTGLKATEDGMYLLSAGSDSRLRLWDIESGCNTLVNFETVRLQ
NSKGIQMAVAQDSSLVFVPCMTSVKAFDLWSGNTSLTFRAHYECVNCCWFNDQDQELYTG
GNDRQILVWSSSELCPDDMDNRTAKGKLPLKDEDNWSD
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgttgtggaaagagattacgagtagagatgaaggtagattacgacctaattctttctcc
cgtcgccttcgatctcgtcgcatttcctctcttcagctttccaacttcaaagaattcgtt
tctccgcatcgcggcgccattaattctctccaggttgatttaacagaggggcgatatttg
ctttccggtgcttcagatgcatctgctgctgttttcgacgttcaacgtgtctcagggttt
gaggatggaggcctcgttgcaaagcacaagtgcctttttgttattgataaacagcaccaa
caaggacacaaatatgccatatcctcagccacatggtatccaattgacactgggctgttt
gttactggttcctatgatcatcacatcaatgtttgggatacgaacactactcaggtggtt
atgaattttaagatgcctggaaaagtttacaagactgccatgagtcctattgctacctcc
catatgttgatagcgtctggaactgaagatgttcaagttcgtctttgtgatattgcttca
ggggcattttctcatacgttgtctggccatcgtgatggtgtaatggcagttgaatggtct
acatcaagcgagtgggttttgatgacaggtggctgtgatggtgccatacgttactgggat
atcagacgtgctggatgttttctggttttggatcagtccaaatctcaacttggcagacgc
ccaccattgttagaacgttcagttgctgacaaggcagcaacatctaaggcaacagggcag
agttcatctgcaaagaataggttacagcagaagaaagtttctcttggtaatgatacaaag
ctttctgctgtgtctagaatgccttctcaactaaaggggggatattcaaagcaaaggcgc
catcctggcatgatgtcaagtcaagatcatgcaactgcgcactatggtgctgtcacaggc
ttaaaagcaactgaagatggcatgtaccttctcagtgcaggttctgattcaagattaaga
ttgtgggatattgaatctggctgtaacacactagtgaattttgaaactgtgcgattgcaa
aacagcaaagggatacagatggctgtggctcaggattcgtctcttgtgtttgttccttgc
atgacatctgtgaaagcattcgatctttggtctggcaatacatctctgacttttcgtgcc
cactatgaatgtgtaaattgttgctggtttaatgatcaagatcaggagttgtacacaggt
ggaaatgataggcagattcttgtctggtcttcatctgaattatgtcctgatgatatggat
aataggaccgcgaaaggaaaacttccccttaaagatgaagataattggagtgattaa
DBGET
integrated database retrieval system
