Beta vulgaris (sugar beet): 104903126
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Entry
104903126 CDS
T03548
Name
(RefSeq) exosome complex component RRP4 homolog
KO
K03679
exosome complex component RRP4
Organism
bvg
Beta vulgaris (sugar beet)
Pathway
bvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104903126
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvg03019
]
104903126
Messenger RNA biogenesis [BR:
bvg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
104903126
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
104903126
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Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
EXOSC1
S1
Motif
Other DBs
NCBI-GeneID:
104903126
NCBI-ProteinID:
XP_010689431
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All DBs
Position
9:13471184..13478630
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AA seq
325 aa
AA seq
DB search
MREIELALNQTQKIRLQRALEKLQCLCSKSKSNASVTVADAIPVNYEDGILKGHGTSELD
GEVIATVCGVVERVNKLVYVRSLRSRYKPETGDILVGRVVEVAQKRWRVEIHSNQDAVLM
LSSITLPDGIQRRRTPVDELNMRNIFEENDVISAEVRNLQHDGTWQLHARSDKYGKLERG
QLITVPSYLVKRRKQHFHQLDQYGVLLILGCNGYVWVGELIEAKDVMEVDDVKESEQTNA
NISGYTSVEVKEQSQTPLETRQNICRIANAVRVLSILGFNITIEVIVEIFNLSTSLNLDI
HEMLGAEFCVTVAEKEADRRNTLRG
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atgcgagaaatagaattagcattgaatcaaactcaaaagattcgactacaaagagctcta
gaaaagctccagtgtctctgctctaaatccaaatctaatgcttccgtcactgtcgccgac
gccattcctgttaactacgaagacggcattctcaaggggcatggaacatctgagcttgac
ggcgaagtgattgcaaccgtgtgtggagttgtcgagcgggttaacaaactcgtctacgtt
cgttctttgcgctccagatacaagcctgaaactggtgatatcctagtagggcgagttgtt
gaggttgctcaaaagcggtggagagtcgagatccattcgaatcaagatgcagttttgatg
ctttcttcaattacattgcctgatggcattcagaggcggcgtacacctgttgatgaactc
aacatgcgtaatatatttgaagagaatgatgttatttctgctgaagtacgtaatcttcaa
catgatggtacttggcagctacatgcaaggagtgacaagtatgggaagcttgagaggggt
caattgatcactgtaccttcttatttggtgaaacgacgcaaacaacacttccaccagtta
gatcagtatggagttctcttaatacttggatgtaatggctatgtctgggttggtgaactc
attgaagcaaaagatgtgatggaagtagatgatgtcaaagaatctgaacaaactaatgca
aatatcagtggctatacaagtgttgaagtaaaagagcaaagtcaaactcccctggaaaca
cggcagaacatttgcaggattgcgaatgctgtcagagtcttatctattctaggtttcaat
ataaccatagaagtaatagtagagatattcaatttgagtacttcattgaatcttgacata
catgagatgcttggagctgagttctgtgttacagtagctgagaaagaggctgaccgacgg
aacacactaaggggttga
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