Beta vulgaris (sugar beet): 104904886
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Entry
104904886 CDS
T03548
Name
(RefSeq) probable CCR4-associated factor 1 homolog 6
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
bvg
Beta vulgaris (sugar beet)
Pathway
bvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104904886
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvg03019
]
104904886
Messenger RNA biogenesis [BR:
bvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104904886
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104904886
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
104904886
NCBI-ProteinID:
XP_010691601
LinkDB
All DBs
Position
9:43972948..43974055
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AA seq
274 aa
AA seq
DB search
MSVVLKSDSVHIREVWEENLEQEFGLIRDIVDAYPFVAMDTEFPGIVLRAVGEFENNTDF
NYRTLKDNVDMLKLIQLGLTFSDEQGNLPTCGTEQFCIWQFNFCEFNLNEDVFAHDSIQL
LRQSGIDFQKNNDRGINALRFGELLMSSGVVLNDNVHWITFHSGYDFGYLLKLLTCQNLP
DTQREFFHLINMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERIGVSHQAGSDSLLTS
CTFRKLKDNFFSGSMEKYAGVLYGLGSDNGQSGH
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttgttctgaagagtgattcagttcacattagagaagtttgggaagaaaatctg
gagcaagaatttggtttaattcgtgatatagttgatgcatacccttttgttgctatggat
actgagtttcctggtattgttcttcgtgctgttggagaatttgagaataacactgatttt
aattacagaactctcaaagataatgttgacatgttgaaattgattcagttaggtcttacg
ttttctgatgaacaaggaaacttacccacttgtggaactgaacaattttgcatttggcaa
ttcaatttttgtgaatttaacctcaatgaggatgtttttgcccatgattctattcagctt
cttcgacaaagtggcatcgattttcagaagaacaacgatagaggcattaatgcccttagg
tttggggagcttttgatgtcatctggggttgttttgaatgataatgtccattggataact
ttccatagtggttatgattttggatacttgcttaagctcttgacatgccagaacctcccg
gacacgcaacgagaattctttcacctcattaacatgtattttcctactctttatgatatt
aagcatttgatgaagttctgtaatagcttacatggtgggttgaacaagcttgctgagttg
ttggaggtcgagaggattggcgtcagtcaccaggctggttctgatagtttgcttacatct
tgtaccttcaggaagttgaaggataatttctttagcggttctatggagaaatatgctggt
gttttgtatggactaggttctgataatggacaaagtggtcactga
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