Beta vulgaris (sugar beet): 104905349
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Entry
104905349 CDS
T03548
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
bvg
Beta vulgaris (sugar beet)
Pathway
bvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104905349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvg03019
]
104905349
Messenger RNA biogenesis [BR:
bvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104905349
mRNA degradation factors
5'-3' decay
Decapping complex
104905349
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
104905349
NCBI-ProteinID:
XP_010692206
LinkDB
All DBs
Position
1:2613669..2620953
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AA seq
784 aa
AA seq
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MAANFGDGLFDASQYEFFGNHIVEEVELGGLDEDEDILVPGIEDDYQHEHEHEHEQVEGV
ATFSDIDDLGGAFSQLNRTVSEPRTGFIGDRGSRESSSAAEWAQDIDYSNWYDQHVYRPE
DGPESKKWSSQPYGSSVRAAESNILHRTSSYPEPPPQLLPQRHQNLSSEPIPMPRSSFPS
YPSSGSRPQMLSANHHPQHANNPYISGGPQMTLHSQTTFSGPMSGLPHSSHLAANLPHFS
PPGHSMDGRPPGQWLNRADLMNNMLQHPLPHQNGLLPQMISQQQQQQQQQQHRLHHPVPP
PYGNLTGVHSQLIGPHMSPSPPMLNKFDAMMGLPDFRDQRPKSSQRNRQNIRYSQQGFDT
NGQRTDGGWPVYRSRYMTADELENILRMQLAATHSNDPYVDDYYHQACLFKKSASARLKH
HFFPTQLRDLPPRARPTDEPHPFLQVEALGRIPFSSIRRPRPLLEVDSLNSTSSGNGEQK
VIDKPLEQEPMLAARVTIEDCLCLLLDIDDIDRFLRFNQFPDGGGELRQRRQSQLEGLAA
SLQLVDPLGKDGQAPKDDFVFLRIVSLPKGRKLLAKFLGMVSPGSELLRIVCMAIFRHLR
FLFGVHPSDQAATEVTAYLGKVVSSCVSEMDLNGLGACLAAVVCSSEQPPLRPIGSSAGD
GASVVLKSVLDRAAELLRDAHAGSSYNMANSAFWQASFDEFFNLLLKYCLNKYDIIVQPM
QMQGLPNLATDVAKAIKKEMPVELLRASLPHTSEHQRKLLLDLAHRSVPLVGSGAHGGNG
SFDG
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atggctgccaattttggtgatggattatttgatgcatctcaatatgaatttttcggcaat
catattgttgaagaagttgagttgggaggccttgatgaagatgaggatatacttgtacct
ggaattgaagatgattatcaacacgaacacgagcacgagcacgagcaggttgaaggtgta
gcaacattttctgatattgatgatcttggtggtgctttttcacagctgaacaggacagtc
agtgaaccaagaactggatttattggtgatagggggtccagagaaagttcttctgcagct
gagtgggcacaggatattgattattcaaactggtatgatcagcatgtatatcgtccagaa
gatgggcctgaaagcaaaaagtggtcctcacagccatatggttcctctgttcgtgctgca
gagtcaaatatattgcatagaacatcatcatatcctgagcccccacctcagcttcttcct
caacgtcatcaaaatctctccagtgaaccgattcccatgcctaggtcttccttcccttcc
tatccttcttctgggagcaggccacaaatgctttcagcaaaccaccatcctcagcatgca
aacaatccatacatttctggtggaccacagatgacactgcattcacaaacaaccttttct
gggcctatgtctggtttacctcatagctctcatcttgctgcaaatctgccgcacttctct
cctcctggtcattctatggatggtcgccctcctggtcaatggttgaatcgtgccgacctc
atgaacaatatgttgcagcatccattacctcatcaaaacggattgctgcctcagatgatt
tctcaacagcagcagcagcagcaacaacagcaacatcgattgcaccatccagttcctcca
ccttatggtaatttaactggggtacattctcaacttattggtccccatatgtctccatca
ccacccatgttgaacaaatttgatgcaatgatggggctccctgatttcagagatcaaaga
cctaaatcatcacagaggaatagacaaaatatacggtactcccaacaaggttttgatacc
aatggtcagaggactgatggtgggtggccagtttataggtcaaggtacatgacagcagat
gaacttgagaatattcttagaatgcagttggctgcgacacacagcaatgacccgtacgta
gatgattattatcaccaagcttgtcttttcaagaaatctgctagtgcaaggttgaaacat
cattttttccccactcaactgagagatcttcctccaagagctcgtcctactgatgagccc
catccgtttctccaagttgaggcattgggaaggattcctttctcgtctatccgcaggcca
aggcctcttcttgaagttgattcgctgaattcaactagctctggcaatggtgaacaaaaa
gttattgataaaccccttgaacaagaacctatgttggcagcaagagtgactattgaggat
tgtctttgtcttcttcttgatattgatgatatagaccgtttccttcgatttaatcaattt
ccagatggtggtggtgaactgagacaaaggcggcaaagccagctggaaggattagcagcc
tcactacagctggtagatccacttggtaaagatggtcaagctccaaaggatgactttgta
ttcctacgaatagtttctctccccaaggggcggaaacttcttgcaaaattcctaggtatg
gtttcccctggaagcgagctcctccggattgtttgcatggccatttttcgtcatttgaga
ttcttgtttggtgtccatccatctgatcaagcagctacagaggtgactgcttaccttggg
aaagtcgtatcatcgtgtgtaagcgagatggatcttaatggactgggtgcttgtcttgct
gcagttgtttgctcctcagagcagcctccacttcggcccattgggagttctgctggagat
ggtgcctctgtagtactgaaatcagttcttgacagagcagctgagttacttagagacgct
catgctggtagcagctataatatggccaattcagccttctggcaggcatcatttgatgag
tttttcaatctactcttaaaatattgcttgaacaagtatgatatcattgtgcagccaatg
caaatgcagggattgccaaacttggccactgatgtggctaaggctattaagaaggaaatg
ccagttgagctgttacgagcaagtcttcctcatactagtgagcaccagcggaaactgtta
ctggatcttgcacatcgttctgtgcctttagttggttctggtgctcatggaggcaatggt
agttttgatggttga
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