Beta vulgaris (sugar beet): 104907180
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Entry
104907180 CDS
T03548
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
bvg
Beta vulgaris (sugar beet)
Pathway
bvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104907180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvg03019
]
104907180
03012 Translation factors [BR:
bvg03012
]
104907180
Enzymes [BR:
bvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104907180
Messenger RNA biogenesis [BR:
bvg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104907180
Translation factors [BR:
bvg03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104907180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
AAA_19
ATPase
T2SSE
PhoH
AAA_16
ABC_tran
Myosin_head
AAA_23
Dicer_dimer
TsaE
Motif
Other DBs
NCBI-GeneID:
104907180
NCBI-ProteinID:
XP_010694373
LinkDB
All DBs
Position
4
Genome browser
AA seq
1156 aa
AA seq
DB search
MHSKLALLLFSGKSISSLSNCRNPTSRYALFNLLISPQFNRLKFTQNLGNLPYFSHFLSL
NRHFSGYAVEQFSDDEYECDFETNAASSSVANIDEWKWKLSMLLRNEHEQEIVSKDKRDR
RDYEQISNLARRMGVYCEIYGKVVVASKVPLPNYRPDLDDKRPQREVAIPLSLQRRVEGL
LQEHLDRAQLNSGKASDGALECKPTDMDRIITLNENPDTMLDDSVMEKILQRRSLQLRNM
QRAWQESPEGRKMLEFRKSLPSFSEKERLLQAIAKNQVIVISGETGCGKTTQLPQYILES
EIESGRGAFCNIICTQPRRISAMAVSERVSAERGESLGESVGYKVRLEGMKGKNTHLLFC
TSGILLRRLLSDRNLSGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLN
AELFSNYFGVAPMIHIPGFTHPVRAHFLEDVLEMTGYKLTSFNQIDDYGQDKVWKTQRQM
VPRKKKNKITTLVEDALKVSSFENYSPRARDSLSSWSPDCIGFNLIEAVLCHICRKERPG
AVLVFMTGWEDINCLKEQIKAHPLLGDPNRVLLLTCHGSMATHEQKLIFERPPPNVRKIV
LATNMAEASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISKASMRQRRGRAGRVQP
GECYHLYPRCVYEAFADYQLPELLRTPLNSLCLQIKSLQIGSIAEFLSSALQPPEPLAVQ
NAIDFLKMIGALDENEHLTNLGRYLAMLPVDPKLGKMLIMGAIFCCFDPVLTIVAGLSVK
DPFLLPQDKKDLAGIAKARFSAKDYSDHMALVRAYEGWKDAEREGSAYEFCWRNFLSAQT
LQAIHSIRKQFNFILRDAGLISEDVRSNNKLSQNQSLVRAVICSGLFPGITSVVHRETSM
SFKTKDDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNTVFIRDSTGVSDSILMLFGGAL
SSGSQPGHLKMLDGYVEFFMDLNMAECYCKLKEELDKLIQNKLEDPTTDILKEGKYLMFA
VQELVSGDQCEGRFVFGRDSRRSKDPVDSNKFSRDGMNPKSLLQTLLMRAGHSPPKYKLK
HLKTNEFRALVEFKGMQFVGKPQRNKQLAEKDAAIEALAWLTHTENKNETEDHNSSPDVT
DNMLKLLGKRRKSKRH
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgcattcaaaacttgcacttcttttgttctccggaaaatccatctcttctctttccaat
tgcagaaatcctacttcaagatatgctcttttcaatcttctgatttctccacaatttaat
cgtcttaagttcacccaaaatcttggaaatttgccctattttagtcatttcctctcctta
aatcgtcatttttccggctatgccgttgagcagttctcagatgatgaatacgaatgcgat
ttcgagactaatgcggcctcgtcttcggtggcaaatattgatgagtggaagtggaaactc
agtatgctgttacgcaatgaacatgagcaagagattgtatctaaagacaaaagagaccga
agagattatgagcagatatctaatcttgctagaaggatgggggtttactgtgaaatatat
ggcaaagtggttgttgcgagcaaggtacctcttcccaattatcggcctgaccttgatgat
aagcggccgcaaagagaggtggcaattccgttaagcttacagaggagagtggaaggttta
cttcaggaacatcttgatagggctcaactgaattctggaaaggctagtgatggtgcactg
gaatgtaagcccactgatatggacaggatcataactttgaatgagaatccagatactatg
ttggatgattctgttatggaaaagattcttcaaaggaggagcttgcaattgcgtaatatg
cagagagcttggcaggaatctcctgaaggcaggaagatgctcgaatttaggaaatcactg
ccttcattcagtgaaaaggagaggctgcttcaagcaattgcaaaaaatcaagtaattgtg
atttcgggcgagactggatgtggtaagaccacccaacttcctcagtatatattagagtca
gaaatagaatcaggccgtggtgccttttgtaatataatctgcacccaacctcgaagaata
tctgctatggctgtttcagaaagagtctctgcagagagaggagaatctcttggtgaatct
gttggctataaagttcgactagaaggaatgaaagggaaaaatacccatctacttttttgt
accagtggtattttgctgcgtcgcttgctgagtgatcgaaacttgagtggtgtgacccat
gtctttgtagatgaaattcatgagcgagggatgaatgaagactttcttttgatcgtgtta
aaggatcttctccctaggcgccgggatttgaggttgattctcatgagtgcaacattaaat
gcagagctgttttcgaattactttggagttgccccaatgatccacataccaggatttaca
catccggtgagggcacattttctggaagatgtgctggaaatgactggatacaaattgaca
tcctttaaccaaattgatgattatggccaagacaaagtttggaaaacacagagacaaatg
gtgccaaggaagaaaaagaataagattaccactcttgttgaggatgctttgaaggtttca
agctttgaaaactacagtcctcgtgcacgggattctctatcaagctggtcacctgactgt
attggatttaatctcattgaagccgtcttgtgtcatatatgtcgaaaggaacggccaggt
gctgttctggttttcatgactggctgggaggatattaattgtttgaaggaacagattaaa
gcccatcctttgttaggagacccgaacagggttttgctacttacttgtcatggttcaatg
gctactcatgaacagaaactgatatttgagaggccgcccccaaatgttcgtaaaatagtt
ttggctacaaatatggcagaggctagcattacaatcaatgacgtagtctttgttgttgat
tgcgggaaagctaaagagaccacatatgatgctctcaataacaccccctgtctactgcct
tcttggatatcaaaggcttctatgcggcagaggaggggccgggctgggcgtgtacagcca
ggagagtgctaccatttatatcccagatgtgtatatgaagctttcgctgactaccaacta
cctgagttgctgagaactccattaaattctctctgtttgcaaataaaaagtttgcaaatt
ggcagtattgcagaatttttgtcatcagctctacagccaccagaaccgttggcagtccaa
aatgctattgatttcctgaaaatgattggagctttggatgaaaatgagcatcttacgaat
cttgggaggtatttggcaatgctgcccgtggatccgaaacttggaaagatgcttataatg
ggtgccatcttctgctgctttgatcctgtcctgacaatagtagcaggtcttagcgttaaa
gatcctttccttttacctcaagacaaaaaggatttagctgggatagcaaaggctagattt
tctgctaaggattatagtgaccatatggctcttgttcgtgcatatgaaggatggaaagat
gctgagcgagaaggctcagcttatgagttctgctggaggaatttcctctctgctcaaact
cttcaggctatccattccattcgaaagcaattcaatttcattttaagagatgctggctta
ataagtgaggatgtaaggtcaaataataagctaagtcagaatcaatcattggtccgtgca
gtcatatgctctggcctatttcctggcataacttctgtggtgcacagagagacatcaatg
tcatttaagacaaaggacgatggacaagttctactctatgcgaattcagtgaatgcacga
taccagacaattccttatccttggctggtgtttggagaaaaagtaaaagtcaatactgtt
ttcatacgtgattcaacaggtgtctctgattcaatattgatgctctttggtggtgctctt
agcagtgggtcacagcctgggcatttgaagatgttggatggctatgttgagtttttcatg
gatctgaacatggccgagtgctactgcaagctaaaggaggagcttgataagctcatacaa
aataagcttgaagatcctaccactgacatcctgaaagaaggaaagtacctaatgtttgct
gtccaagaactagtatcaggagatcaatgtgaagggagatttgtatttgggcgtgatagc
aggagatctaaggatcctgtagacagcaataaattttcgagagacggaatgaatccaaag
agcttgctgcagactctgttgatgagagctggacattcccctcctaaatacaaacttaaa
cacctaaaaaccaatgagttcagggccctggtggaattcaaagggatgcaatttgtggga
aagcctcagaggaacaagcaacttgctgaaaaggatgctgcgatagaagctttagcatgg
ttaacacatactgaaaataaaaatgagactgaggatcataattcatcaccagatgtcact
gacaacatgctgaaactacttggaaaacgtagaaaatctaaacgccattga
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