Beta vulgaris (sugar beet): 104908261
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Entry
104908261 CDS
T03548
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
bvg
Beta vulgaris (sugar beet)
Pathway
bvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104908261
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvg03019
]
104908261
03012 Translation factors [BR:
bvg03012
]
104908261
Enzymes [BR:
bvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104908261
Messenger RNA biogenesis [BR:
bvg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104908261
Translation factors [BR:
bvg03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104908261
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_16
AAA_19
T2SSE
ATPase
Motif
Other DBs
NCBI-GeneID:
104908261
NCBI-ProteinID:
XP_010695655
UniProt:
A0A0J8BC63
LinkDB
All DBs
Position
5
Genome browser
AA seq
1195 aa
AA seq
DB search
MPCSSPFFHGYLRTTSHLAMSLKPTRNFRFHFHNISSCSCPRTPFSLHEFGQQKSFKTLV
FGPLLWRPITCRVAAVGASKGSFELLRRSNGELPYLFQQNKEFGRFACEDYSEDESDREV
DSAHQINSSTLDNIEEWRWKFTMLCRNKDEQEVVSRERKDRRDFDQLTALATRMGLHSRQ
FSKVVVFSKVPLPNYRHDLDDKRPQREVVLGFALQQDIDILLKRHLSKKSMNEGVIPNYT
ISGNNSYLNKQEVSYHQPEPTAEINAARERSLRRKSLQIRDQQQEWQDSPEGQKMLKFRR
SLPAYKERDALLKAVSENQVVVVSGETGCGKTTQLPQYILESEIEAARGASCSIICTQPR
RISAMSVSERVAAERGEQLGESVGYKIRLEGMKGRDTRLLFCTTGVLLRRLLVDRDLRGV
SHVVVDEIHERGMNEDFLLIVLKDLLRRRPDLRLILMSATLNAELFSSFFGGAPMLHIPG
FTYPVRAHFLENILETTGYRLTPYNQIDDYGQEKTWKMQKQTLRKRKTQIASSVEGALVD
SDFNGFSHRTRDSLSCWNPDSIGFNLIEHVLSHICKNERPGAVLVFMTGWEDINTLKDQL
QAHPLLGDPSRVLLLACHGSMASAEQRLIFDRPPKGVRKIVLATNMAETSITINDVVFVV
DCGKAKETSYDALNNTPCLLPSWVSKAAARQRRGRAGRVQPGECYHLYPKCVYDAFSDYQ
LPELLRTPLQSLCLQIKSLQLGGVSEFLSKALQPPEPLSVQNAIDFLKTIGALDENENLT
VLGQNLSVLPVEPKLGKMLILGAMFKCLDPIMTVVAGLSVRDPFLMPFDKKDLAESAKAQ
FSAREFSDHLALVRAYEGWKDAERQQSGYEYCWTNFLSAQTLKAIDSLRKQFFSLLKDTG
LVESDKETCNKWSHDEHLVRAIICAGLFPGVCSVVNKEKSIMLKTMEDGQVLLYSNSVNA
QEPKIPYPWLVFNEKIKVNAVFLRDSTAVSDSVLLLFGGKISRGGLDGHLKMLGGYLEFF
MKPGLAETYLSLKREFEELIHCKLVDPKLDMQSYADLLSAVRMLISEDQCEGRFVFGRQL
PTPSKKAGKATNAKGEKISGDDNSKSQLQTLLARAGHEAAAYKTRQLKNNQFRSTVIFNG
LEFVGQPCNNKKQAEKDAAAEALQWLMGDTPSFRGDVDHLSMFMKKTKKKHGKGT
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atgccctgctcttcccccttcttccatggctatctccgcacaacttcacacctcgccatg
tcccttaaacctacacgcaatttccgcttccacttccacaacatttcttcttgttcttgt
cctcgaacacctttctctctccacgaatttgggcaacaaaagtcctttaaaaccctagtg
tttgggccccttctatggcggccgataacttgccgagtagcggctgtcggcgcgtctaaa
ggatcctttgaactgttgcgccggagcaatggggaattgccatacttgtttcagcagaat
aaggagtttggaaggtttgcttgtgaagattattcagaggatgagtctgatcgagaagtt
gattctgcacaccaaataaattcttcaacacttgacaatattgaggaatggagatggaaa
ttcacaatgctttgtcgaaacaaagatgaacaagaagtggtgtcaagggagagaaaggac
aggcgcgactttgatcaacttactgctttggcaacgagaatgggtttgcatagccgtcaa
ttttccaaagtggttgtctttagtaaagttccattaccaaattatcgccatgatctagat
gataagcggccacaacgggaggttgtacttggatttgctctgcaacaggatatagatatt
cttctcaagaggcacctttctaaaaaatccatgaatgaaggggttattccaaattacact
atttcggggaacaattcctatttaaataagcaggaagtatcataccatcagcctgagccc
acggcagagatcaatgccgccagggagagatcccttcggcggaaaagtttgcaaatccgg
gatcagcagcaagagtggcaggattcaccggagggtcagaagatgttgaaatttcgaaga
agtctaccagcatacaaagaaagagacgctttattgaaggccgtctcagaaaatcaggta
gtagttgtatctggtgaaactgggtgtggtaagacaactcaacttcctcaatacatttta
gagtctgaaattgaagctgcccgtggagctagttgcagcattatctgcacacagccaaga
agaatatcagctatgtctgtttcagagcgagttgctgcagaacgaggggagcaacttgga
gaatcagttgggtacaaaataagattggaggggatgaaagggagggatacacgcctcctt
ttctgcacaactggtgtactgttgaggaggctgcttgttgacagagatttgaggggtgtg
agtcatgttgttgttgatgaaattcatgagcgtggcatgaacgaagattttctcctgatt
gtcttgaaagatctcctgcgccgtcgtccagatttgaggttgatattgatgagtgcaacc
ctgaatgctgagctcttttcctctttctttggtggagctcctatgctacatattcctggt
ttcacatatcctgtacgggctcactttctggagaatatcttggaaacaactgggtatagg
ctgaccccctataatcagattgatgattatggtcaagaaaagacatggaaaatgcagaaa
caaactcttaggaagagaaagacacaaattgcttcgtcagtagagggggcactagtagac
tctgatttcaatgggtttagtcatcggactagagattcattgtcgtgctggaacccagat
tcaattggttttaatctcattgaacatgtgttaagccatatatgtaagaatgaaagacct
ggtgcggttttagtttttatgactggttgggaggatattaatactttgaaggaccagctg
caagctcatcctttacttggagatccgagcagagttttgctgcttgcttgccatggttcc
atggctagcgctgaacagaggctgatatttgataggcctccaaaaggagtgaggaagata
gtgcttgctacaaacatggcagagaccagtatcaccattaatgacgtggtatttgttgtt
gactgtggtaaagcaaaagagacatcatatgatgcattgaataacactccctgcttacta
ccttcctgggtctcaaaagctgctgctcggcagcgaagaggaagagctggtcgtgttcaa
ccaggggagtgctaccatctttatccaaaatgtgtctacgatgcttttagtgattatcaa
ttgcctgagcttttgaggacgcctctacagtccctctgtcttcagataaaaagtttacag
cttggtggtgtttctgagtttctgtcaaaggctctgcaaccaccagaaccattatcggtt
caaaatgctattgattttttaaagacaattggagctctggatgaaaatgaaaatctcacc
gtgcttggtcagaacttgtccgtgcttcctgtggagccgaaactagggaaaatgctaata
ttgggggctatgttcaaatgcctagacccaataatgactgttgttgctggtttaagtgtt
cgagacccgttcctaatgccatttgacaaaaaggatcttgcagagtcagcaaaggctcag
ttctctgctcgtgagttcagtgaccatcttgcccttgttcgagcttatgaaggatggaaa
gatgctgaaagacaacaatctggttatgaatactgttggacaaattttttgtctgcccag
actctgaaagctattgattctttgcggaagcaattcttctccttgcttaaagatacaggt
cttgttgagtccgataaagaaacctgtaacaagtggagccatgatgagcatcttgttcga
gcaatcatttgtgcaggtttattccctggtgtttgttcagttgtgaacaaagaaaagtca
ataatgttgaaaacaatggaagatgggcaggtccttttgtattcgaattcagtaaatgca
caagaacctaaaataccatatccctggcttgtttttaatgagaagatcaaggtcaatgct
gtcttcctgagggattcaacggcagtgtcagattctgtattgttgctgtttgggggaaaa
atttcaaggggtggactggatggacacctaaaaatgctgggcggatacttagagttcttc
atgaaacctggcttagcagaaacctacttatccttgaaaagagaattcgaggagcttatt
cattgcaagctagtggatccgaagttggacatgcaaagttacgccgacctactatctgcc
gtgagaatgctgatatcagaagaccaatgtgagggtagatttgtctttggtcgtcaattg
ccaactccatcgaagaaggcaggtaaagcgacgaatgcaaagggtgagaaaatcagtggt
gacgataattctaaaagccaattgcaaactttgcttgcaagagcagggcatgaagctgct
gcgtacaagactagacaactgaagaacaatcagttccgttctactgtaatattcaatggc
ttggagtttgttggtcaaccttgtaacaataaaaagcaggcggaaaaggatgccgctgca
gaagctttacaatggttgatgggtgataccccttcatttcggggagatgtagatcatttg
tcaatgtttatgaagaaaactaagaagaagcatggcaaaggaacatag
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