Beta vulgaris (sugar beet): 104908615
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Entry
104908615 CDS
T03548
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
bvg
Beta vulgaris (sugar beet)
Pathway
bvg03013
Nucleocytoplasmic transport
bvg03015
mRNA surveillance pathway
bvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104908615
09122 Translation
03013 Nucleocytoplasmic transport
104908615
03015 mRNA surveillance pathway
104908615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvg03019
]
104908615
03041 Spliceosome [BR:
bvg03041
]
104908615
Enzymes [BR:
bvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104908615
Messenger RNA biogenesis [BR:
bvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
104908615
Spliceosome [BR:
bvg03041
]
Complex C
Other components
EJC/TREX
104908615
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
104908615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
104908615
NCBI-ProteinID:
XP_010696045
LinkDB
All DBs
Position
2:complement(7321974..7330280)
Genome browser
AA seq
428 aa
AA seq
DB search
MGETRENDAYEEELLDYDEEEEKVPDSAVTKTNGEAGKKGYVGIYSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPGVKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILA
LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKAIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMSQEERLARYKGFKDGKQRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaactagagaaaacgatgcttatgaagaggagcttcttgattacgatgaggag
gaagagaaggttccagattccgctgtcaccaaaactaatggcgaagccgggaaaaagggt
tacgttggcatctacagttcaggattcagagacttccttttgaagccagagctgctgcgt
gcaattgtggactctggttttgagcacccatctgaagtgcaacacgagtgtattcctcaa
gctatattgggtatggatgtcatatgccaagccaaatctggtatggggaagaccgccgtt
tttgttctctcaaccctacaacagattgatcctgtggctggtcaagttgctgcacttgtt
ctatgtcacaccagagaattggcttatcagatctgtcacgagttcgagaggtttagcaca
tatttgccaggtgttaaggttgctgttttctatggaggtgttaatattaaaatccacaag
gacctgctcaagaatgaatgcccacacattgttgtgggtacacctggaaggattcttgca
ctggccagagataaagacctgtcattaaagaatgttcggcattttattcttgatgaatgt
gataaaatgcttgagtcccttgacatgaggagagatgttcaggagatcttcaaaatgact
ccccatgacaagcaagtgatgatgttttccgcaactctaagcaaggcaatccgtcctgtt
tgcaagaaatttatgcaagatccgatggaaatatatgtagatgatgaagccaagctgacc
ctccacgggcttgtacagcactacatcaagttatctgagctggagaagaatcgcaaattg
aacgacctcttggatgctttggattttaatcaagttgtcatctttgtcaagagtgtcagt
agagctgctgagctgaacaagcttcttgtggagtgcaactttccgtccatctgtatccat
tctggcatgtcccaggaagaaagattggctcggtacaagggctttaaggacgggaagcag
agaatcctagttgcaacagatttagttggtagaggaattgacattgaaagagtgaacatt
gttatcaattatgacatgccggattctgctgacacttacctgcatcgggttggcagagct
gggaggtttggcacaaaaggtcttgcaatcacatttgtttcttctgcctctgactctgac
gttcttaatcaggtccaggagaggtttgaggtggatattaaggagcttcctgagcagata
gacacctccacatacatgccatcttag
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