KEGG   Burkholderia vietnamiensis G4: Bcep1808_1734
Entry
Bcep1808_1734     CDS       T00493                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
bvi  Burkholderia vietnamiensis G4
Pathway
bvi02024  Quorum sensing
bvi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bvi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Bcep1808_1734
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    Bcep1808_1734
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bvi03019]
    Bcep1808_1734
   03036 Chromosome and associated proteins [BR:bvi03036]
    Bcep1808_1734
Messenger RNA biogenesis [BR:bvi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     Bcep1808_1734
Chromosome and associated proteins [BR:bvi03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    Bcep1808_1734
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: ABO54738
UniProt: A4JEN5
LinkDB
Position
1:complement(1887846..1888085)
AA seq 79 aa
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAI
STVVPARPVNFHPDAEASS
NT seq 240 nt   +upstreamnt  +downstreamnt
atgagcaacaaagggcaattgttacaagacccgtttttgaacgcactgcgtaaagagcac
gttcctgtttcgatctatctcgtcaacgggatcaagctccaagggaacatcgaatccttc
gaccagtacgtcgtgttgctccgtaacaccgtgacccagatggtctacaagcacgccatt
tcgacggtcgtgccggcgcgcccggtgaatttccacccggacgcggaagcttcgtcctaa

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