Burkholderia vietnamiensis G4: Bcep1808_2234
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Entry
Bcep1808_2234 CDS
T00493
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bvi
Burkholderia vietnamiensis G4
Brite
KEGG Orthology (KO) [BR:
bvi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvi03019
]
Bcep1808_2234
Enzymes [BR:
bvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Bcep1808_2234
Messenger RNA biogenesis [BR:
bvi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Bcep1808_2234
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
T2SSE
nSTAND3
AAA_19
NACHT
AAA_23
AAA_25
nSTAND_NTPase5
Motif
Other DBs
NCBI-ProteinID:
ABO55236
UniProt:
A4JG33
LinkDB
All DBs
Position
1:complement(2480647..2484831)
Genome browser
AA seq
1394 aa
AA seq
DB search
MSNVPKSPAPTRANADPAQHPDGAADARQQPGRQQQTRQGGKPPRDDERRRDAGQPAAPA
TRAADGERTPRRERAPRAPIAPNPVPKISYPESLPVSGRRDEIARAIAAHQVVIVCGETG
SGKTTQLPKICLGLGRGLGAGGTGLIGHTQPRRLAASSTGRRIAEELGTPFGEVVGYKVR
FTDNLAPGASVKLMTDGILLAETQNDPLLKAYDTLIIDEAHERSLNIDFLLGYLKEILPR
RPDLKLIVTSATIDADRFARHFGSDARPAPVIEVSGRLYPVEVRYRPVAEDRPAVKNAEG
TGGRDRVKTAREAERDLMDAIVDAVDELCREGPGDVLVFLPGEREIRDAAEALRKHHPPH
TEILPLFARLSAADQDKVFKASNARRIVLATNVAETSLTVPGIRYVVDTGLARVKRYSYR
NKVEQLQVESISQAAANQRAGRCGRVADGICIRLYEESDFQARARFTDPEILRSSLAAVI
LRMKSLHLTAIESFPFLEPPPGRAIADGYQLLNELGAVDDDNALTPLGRELARLPLDPRV
GRMILAARDQQALREVLIIASALSVQDPRDRPSDAQEQADQAHRRFADERSEFLQWLKIW
AWFEEAVAHKKSNRQLIDACRQNFLSHLRLREWRDVHSQLLTVVREHGWRLNEAEATYEQ
IHLALLTGLLGNLGLKADDDPHYLGARGIKFYLWPGSALAKKAGRWVMAAELVETSRLYA
RCLAKIEPEWVEKVGAHLLKKSLSEPHWEKRPAQVSAFERATLYGLPIYHRRRVAFGRQD
PARARELFIRGALVEGEFDTRLPFFAHNRKLLADIEQLEHKSRRQDVLVDDELIYAYYDQ
AIPQGIHTGAAFERWYRDEVKKGGQPEDKQRLLYLSRDDLMRHEAAGVTTELFPKRMTMA
GVEMALTYHFEPGTPRDGVTLAVPLYALNQVDARRCEWLVPGMLKEKVQLLLKSLPQKLR
RHCVPLPEYAAGFVERMGRERFGAGGLVDALIADVRGETQVAMKTADFKLETLPAHLFMN
FKVIDEHGRQLAMGRNLAQLRQELGAQAQQQFQKIAAASSIAASGDAAGDAPAGASAPGG
AGAAGALAKGGKPARGAAPHTAAPAEAGATALYENLTTWNFGKLPELLEIRRRGQTLYGY
PALVDRGTHCDVEVFDSPEEAARIHRAGLRRLFALQLKEPIKFLEKNLPGLREMAMQYMS
LGTQDELRDQLIDTALDRACLQEPLPDDDASFHARRDEGRSRLNLLAQEIARLVAQILAE
YAGLAKKLAQAKPFAQAHADLQQQLAALVGKRFVIDTPYVQLAHFPRYLKGIALRIDKLK
ADPARDAKQFAELQPLVQQYQRAVSQRGGVVDPRLAEFRWLLEELRISLFAQELRTPMPV
SVKRLHKVWESMQR
NT seq
4185 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatgtacctaaaagtcccgcgccgacgcgggccaacgcggacccggcgcagcac
ccggacggtgcagccgatgcgcgtcagcagccgggccggcagcagcaaacgcggcagggc
ggcaagccgccgcgcgacgacgaacggcgccgcgatgcgggccagccggccgcgccggct
acgcgcgcggccgacggcgagcgcacgccgcgtcgcgaacgtgcgccgcgcgcgccgatc
gcaccgaaccccgtcccgaagatcagctatccggaaagcctgcccgtgtcgggccggcgc
gacgagatcgcgcgcgcgatcgccgcgcatcaggtcgtcatcgtttgcggcgagacgggt
tcgggcaagaccacccagctgccgaagatctgcctcggtctcggccgcggcctcggcgcc
ggcggcacgggcctgatcggccacacgcagccgcggcggctcgccgcgtcgtcgacgggc
cggcgcatcgccgaggagctcggcacgccgttcggcgaagtggtcggctacaaggtgcgc
ttcaccgacaacctcgcgccgggcgcgtcggtcaagctgatgaccgacggcatcctgctc
gccgagacgcagaacgatccgctgctgaaggcgtacgacacgctgatcatcgacgaggcg
cacgagcgcagcctgaacatcgacttcctgctcggctacctgaaggagatcctgccgcgc
cggccggacctgaagctgatcgtcacgtccgcgacgatcgacgccgaccgcttcgcgcgc
catttcggcagcgacgcgcgcccggcgcccgtgatcgaggtgagcgggcggctgtatccg
gtcgaggtccgctatcggccggtggccgaggaccgcccggccgtgaagaacgccgaaggc
accggcgggcgcgaccgcgtgaagaccgcgcgcgaggccgaacgcgacctgatggacgcg
atcgtcgacgcggtcgacgaactgtgccgcgaaggccccggcgacgtgctggtgttcctg
cccggcgagcgcgagatccgcgacgcggccgaggcgctgcgcaagcaccatccgccgcac
accgagatcctgccgctgttcgcgcggctgtcggcggccgaccaggacaaggtgttcaag
gcgtcgaacgcgcgccgcatcgtgctcgccaccaacgtggccgaaacgtcgctgaccgtg
ccgggcatccgctacgtcgtcgacaccggcctggcgcgcgtgaagcgctattcgtaccgc
aacaaggtcgagcagctgcaggtcgagtcgatctcgcaggccgccgcgaaccagcgcgcg
ggccgctgcggccgcgtggccgacggcatctgcatccgtctgtacgaagaaagcgacttc
caggcgcgcgcgcgcttcaccgatccggaaatcctgcgctcgtcgctcgcggcggtgatc
ctgcggatgaagtcgctgcacctcaccgcgatcgaatcgtttccgttcctcgagccgccg
cccggccgcgcgatcgccgacggctatcagctgctcaacgagctcggcgcggtcgacgac
gacaacgcgctgacgcctctcggccgcgagctcgcgcgcttgccgctcgacccgcgcgtc
ggccggatgatcctcgccgcgcgcgaccagcaggcgttgcgcgaagtgctgatcatcgcg
agtgcgctgtcggtgcaggatccgcgcgaccgtccgagcgacgcgcaggagcaggccgat
caggcgcaccgccggttcgccgacgagcgctccgaattcctgcaatggctgaagatctgg
gcgtggttcgaagaggccgtcgcgcacaagaaatcgaaccgccagctgatcgatgcgtgc
cgccagaacttcctgtcgcacctgcggctgcgcgaatggcgcgacgttcattcgcaactg
ctgacggtcgtgcgcgagcacggctggcgtctgaacgaagccgaggcaacctacgagcag
atccatctggccctgttgaccggcctgctcggcaacctcggcctgaaggccgacgacgat
ccgcattacctcggcgcgcgcgggatcaagttctatctgtggccgggctccgcgctcgcg
aagaaggccggccgctgggtgatggcggccgagctcgtcgagacgagccggctgtacgcg
cgctgcctcgcgaagatcgagccggagtgggtcgagaaggtcggcgcgcatctgttgaag
aagtcgctgtcggagccgcattgggagaagcgtcccgcgcaggtcagcgcgttcgagcgc
gcgacgctgtacgggctgccgatctaccatcggcggcgcgtcgcgttcggccggcaggac
ccggcgcgcgcccgcgagctgttcatccgcggcgcgctggtcgaaggcgaattcgacacg
cggctgccgttcttcgcgcacaaccgcaagttgctcgccgatatcgagcagctcgagcac
aagtcgcgccgccaggacgtgctggtcgacgacgagctgatctacgcgtactacgaccag
gcgattccgcaaggcatccatacgggtgcggcgttcgagcgctggtatcgcgacgaggtg
aagaagggcggtcagccggaggacaagcagcgcctgctgtatctgtcgcgcgacgacctg
atgcgtcacgaggcggccggcgtgacgaccgagctgttcccgaagcgcatgacgatggcc
ggcgtcgagatggcgctcacctaccatttcgagcccggcacgccgcgcgacggcgtgacg
ctcgcggtgccgctgtacgcgctgaaccaggtcgacgcgcgccgttgcgaatggctggtg
ccggggatgctgaaggagaaggtgcagctgctgctgaagtcgctgccgcagaagctgcgc
cggcactgcgtgccgctgcccgagtacgcggccggcttcgtcgagcgcatgggtcgcgag
cgcttcggcgcgggcggcctcgtcgacgcgctgatcgccgacgtgcgcggcgaaacgcag
gtcgcgatgaagacggccgacttcaagctcgagacgttgcccgcgcacctgttcatgaac
ttcaaggtgatcgacgagcacgggcgccagctcgcgatgggccgcaatctcgcgcagctg
cgccaggagctcggcgcgcaggcgcagcagcagttccagaagatcgcggccgcgtcgtcg
atcgcggcgagcggcgatgcggccggcgacgccccggccggcgcatcggcgccgggcgga
gcgggtgcggcaggcgcgctggcgaagggcggcaagccggccaggggcgcggcgccgcat
acggcggcgcccgcggaagccggcgcgaccgcgctgtacgagaacctgacgacgtggaat
ttcggcaagcttcccgagctgctggagatccgccggcgcggccagacgctgtacggctat
ccggcgctcgtcgatcgcggcacgcattgcgacgtcgaggtgttcgactcgcccgaggaa
gccgcgcgcatccatcgtgcgggcttgcggcggctgttcgcgctgcagctgaaggagccg
atcaagttcctcgagaagaacctgccggggctgcgcgagatggcgatgcagtacatgtcg
ctcggtacgcaggacgaactgcgcgaccagctgatcgacacggcgctcgaccgcgcgtgc
ctgcaggagccgctgcccgacgacgacgcgagcttccacgcgcgccgcgacgagggccgc
agccgcctgaacctgctcgcgcaggagatcgcgcggctcgtcgcgcagatcctcgccgaa
tacgcggggctcgcgaagaagctcgcgcaggcgaagccgttcgcgcaagcgcatgccgat
ctgcagcagcagctcgcggcgctggtcggcaagcgcttcgtgatcgacacgccttacgta
cagcttgcgcactttccgcgctatctgaagggcatcgcgctgcggatcgacaagctgaag
gcggacccggcgcgcgacgcgaagcagttcgccgagctgcagccgctcgtccagcagtac
cagcgcgcggtgtcgcagcgcggcggcgtcgtcgatccgcggctcgcggaattccgctgg
ctgctcgaggaactgcgcatttcgctgttcgcgcaggaactgcgcacgccgatgcctgtc
tctgtcaagcgtctgcacaaggtgtgggagtcgatgcagcgctag
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