Burkholderia vietnamiensis G4: Bcep1808_2405
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Entry
Bcep1808_2405 CDS
T00493
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bvi
Burkholderia vietnamiensis G4
Pathway
bvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bcep1808_2405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvi03019
]
Bcep1808_2405
Enzymes [BR:
bvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Bcep1808_2405
Messenger RNA biogenesis [BR:
bvi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Bcep1808_2405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ABO55404
UniProt:
A4JGK1
LinkDB
All DBs
Position
1:complement(2667498..2669036)
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AA seq
512 aa
AA seq
DB search
MSAGPAGLTHDVPAAPFERNATMSDSVAKPADATFDQFGLAPDILKAIVEQGYTTPTPIQ
AQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPHASTSASPARHPVRALILTPTRE
LADQVAANVHAYAKHTALRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTAN
LGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQ
TIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRGRGLKQVIVFCNSKIGASRLARNLE
RDGVVASAIHGDKSQIERMQALDAFKRGEIEALVATDVAARGLDIAELPAVINFDLPFNA
EDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLIKRPLEVQTLALDKPARHRHDER
NERGERSERGGRRDRDEHRGASARRSGSAERGGHHRRHDAPVDDFFLKPYEPSTPAQQPE
ETTSVQQPEKKGPKRQVAALLGGFGMPRKPSA
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcaggcccggccggcctgacgcacgatgtccccgccgcgccttttgagcgaaac
gccaccatgtccgattctgtcgccaagcctgccgacgcaaccttcgatcaattcggcctc
gcgcccgatatcctgaaagccatcgtcgagcagggctatacgacgccgacgccgatccag
gcgcaggccattccggtcgtgctcgccggccgcgacgtcatgggcgccgcgcaaacgggc
accggcaagaccgcgagtttctcgctgccgatcatccagcggctgctgccgcacgccagc
acgagcgcgtcgccggcgcgccatccggtgcgcgcgctgatcctcacgccgacgcgcgag
ctcgccgaccaggtcgccgcgaacgtgcatgcgtacgcgaagcacacggcgctgcgcagc
gcggtcgtgttcggcggcgtcgacatgaatccgcagatggccgagctgcgccgcggcgtc
gagatcctgatcgcgacgccgggccgcctgctcgatcacgttcagcaaaagacggcgaac
ctcggccaggtccagatgctcgtgctcgacgaagccgaccggatgctcgacatgggcttc
ctgcccgacctgcagcgcatcctgaacctgctgccgaaggagcgtcagacgctgctgttc
tccgccacgttctcgccggaaatcaagaagctcgcgtcgacctacctgcgcaacccgcag
acgatcgaagtcgcgcgcagcaactcgaccaacgcgaacgtcacgcagatcgtctacgac
gtcgccgaaggcgacaagcaggcggccgtcgtgcagttgctgcgcgggcgcgggctcaag
caggtgatcgtgttctgcaacagcaagatcggcgcgagccggctcgcgcgcaatctcgag
cgcgacggcgtggtggcctcggcgatccacggcgacaagtcgcagatcgagcggatgcag
gcgctcgacgcgttcaagcgcggcgagatcgaggcgctggtcgcgaccgacgtggccgcg
cgcgggctcgacatcgccgaactgccggccgtgatcaacttcgacctgccgttcaacgcg
gaagactacgtgcaccggatcggccgcacgggccgcgccggggcgacgggcgacgcgctg
tcgctgtgcagcccgaacgagcgcaagcagctcgccgatatcgagaagctgatcaagcgt
ccgctcgaagtgcagacgctcgcactcgacaagccggcccgccatcgtcacgacgagcgc
aatgagcgcggcgaacgtagcgagcgcggcggccgtcgcgaccgcgacgagcatcgcggc
gcgtcggcgcgtcgttcaggcagcgccgagcgcggtggtcatcatcgccgccacgacgcg
ccggtcgacgattttttcctgaagccgtacgaaccgtcgacgccggcgcagcaacccgag
gagacgacgtccgtccagcagcccgagaagaaagggccgaagcggcaggtcgccgcgctg
ctcggcgggttcggcatgccgcgcaagccttccgcataa
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