Burkholderia vietnamiensis G4: Bcep1808_2782
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Entry
Bcep1808_2782 CDS
T00493
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bvi
Burkholderia vietnamiensis G4
Pathway
bvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bcep1808_2782
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvi03019
]
Bcep1808_2782
Enzymes [BR:
bvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Bcep1808_2782
Messenger RNA biogenesis [BR:
bvi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Bcep1808_2782
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
DegT_DnrJ_EryC1
Ric8
Cas3-like_C_2
Sacchrp_dh_NADP
CMS1
CARD_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ABO55773
UniProt:
A4JHM0
LinkDB
All DBs
Position
1:3080381..3081841
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AA seq
486 aa
AA seq
DB search
MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL
QRLHTFYTEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI
DALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPP
RRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHL
IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNNTLQVL
VATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRD
IERLIKREIPQEVIAGFEPDPNVKPEPIQQRRGQQPRGGGNGGGGGGGGGNRQPRAGGSG
QAGAKRDANAQPKAAKAAKPRAAGGASGNANGGGRPAGGGNGARPANGNAAHPNRNRSSR
SGQRGH
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgaatctctcggcctggccgaaccgctcgtcaaggcggtcaacgagctcggc
tacacgtcgccgaccccgatccagcagcaggcgatccccgccgtcctcggcggcggcgac
ctgctcgccggcgcacaaaccggcaccggcaagaccgccggcttcacgctgccgatcctg
cagcggctgcataccttctacaccgagcatcgcggcgcgaagcgtgcggtgcgcgcgctg
atcctcacgccgacgcgcgaactcgccgcccaggtcgaggaaagcgtgcgcgcgtacagc
aagtacgtgaagctgcgctcgaccgtgatgttcggcggcgtcagcatcaatccgcagatc
gacgcgctcaagcgcggcgtcgacatcgtcgtcgcgacgccgggccgtctgctcgaccac
atgcagcagaagacgatcgacctgtcggatctcgacatcctcgtgctcgacgaagcggac
cggatgctcgacatgggcttcatccacgacatcaagcgcgtgctcgcgaagctgccgccg
cggcgtcagaacctgctgttctcggcgaccttctccgacgagatcaaggcgctcgccgac
agcctgctcgattcgccggcgctgatcgaagtcgcacgccgcaatacgacggcggaaacc
gtcgcgcagaagatccacccggtcgatcgcgatcgcaagcgcgagctgctcacgcatctg
atccgcgagcacaactggttccaggtgctcgtgttcacgcgcaccaagcacggcgcgaac
cggctcgccgagcagttgacgaaggacggcatcagcgcgatggcgatccacggcaacaag
agccagtcggcccgcacgcgcgcgctggccgagttcaagaacaacacgctgcaggtgctc
gtcgcgaccgacatcgccgcgcgcgggatcgacatcgaccagttgccgcacgtcgtcaac
ttcgacctgccgaacgtgccggaagactacgtgcaccgcatcggccgcacgggccgcgcg
ggcgcgaccggcgaagcggtgtcgctggtgtgcgtcgacgagaagcagttgctgcgcgac
atcgagcggctgatcaagcgcgagattccgcaggaagtgatcgcgggcttcgaacccgat
ccgaacgtcaagccggagccgattcagcagcgtcgcggccagcagccgcgcggcggcggc
aacggtggcggcggtggcggcggcggtgggaatcgtcagccgcgtgcgggcggctcaggc
caggccggcgcgaagcgcgacgccaacgcgcagccgaaggccgcgaaggcggccaagccg
cgcgcggccggcggtgcgagcggtaacgccaacggcggcggccgcccggccggcggcggc
aacggcgcacgtcccgccaacggcaatgccgcgcacccgaaccgcaaccgttcgtcgcgc
agcggccagcgcggtcactga
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