Butyricimonas virosa: I6J59_12615
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Entry
I6J59_12615 CDS
T07173
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bvir
Butyricimonas virosa
Pathway
bvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I6J59_12615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvir03019
]
I6J59_12615
Enzymes [BR:
bvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
I6J59_12615
Messenger RNA biogenesis [BR:
bvir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I6J59_12615
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
P-loop_SecA
ResIII
ERCC3_RAD25_C
Utp25_C
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
QRO48783
LinkDB
All DBs
Position
complement(3074316..3075476)
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AA seq
386 aa
AA seq
DB search
MTFRELEIAEPILKAICEKGYEKPTPIQEKGIPVALGGGDMLGIAQTGTGKTATFAIPIL
QHLLADRSEENRSETRGNKGRLVKRRSIKALILTPTRELAIQIGENITDYGKYTGIRHAI
IFGGVKQGPQTDLLQAGVDILVATPGRLLDLIRQGYVNLSSITHFVLDEADRMLDMGFIA
DIRRLLPMLPTKRQTLFFSATMPKDIVNLSRSILSTPTRVEVTPVSSAVDTVEQCVYFVE
KTEKKKLLVSLLKQEKKSVLVFSRTKHGADNISRLLKKSGIKSEAIHGDKSQGQRQRALS
NFKAGAIRVMVATDIAARGIDIQELEIVINYDLPDVAETYVHRIGRTGRAGHLGTAVTFC
SEEEQSKIREIQVLTGKKINRLSFQA
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atgacatttagagaattagaaattgcagagcctattttaaaggctatctgtgaaaaagga
tatgaaaagcccaccccgatacaagagaagggtatacctgtggctcttggtggtggcgat
atgctgggaattgcccagaccggaaccggtaagacagcgacattcgctataccgatcctg
caacatttactggccgatcgttcggaggaaaatcgttcggaaacacgagggaataaagga
cgtctcgtgaaaagacggtctattaaggctttaatcctgacgccaacccgtgaattggct
atccagatcggagagaatatcacggattacgggaagtacacggggattaggcatgcgatt
atattcggcggagtgaaacaaggaccgcagacggatctgttacaggcaggagtagatatt
cttgttgccacaccgggacgtttgctcgatttgatccggcagggatatgtgaatctttca
tcgatcacgcattttgttctggatgaggccgacaggatgctggatatgggatttattgcg
gatatacgacgtttgttacccatgctgccgacaaagcgccagacgctgttcttctcggca
acgatgcctaaagatatagtgaatttatcgagaagtattctttcaaccccgacaagggtg
gaggtaaccccggtttcttctgccgtcgatacggtggaacaatgtgtctatttcgtggag
aaaacggaaaagaagaaacttcttgtttccttgttgaaacaagagaaaaagtcggtgctt
gttttttcacgtaccaagcatggggcggataatatatcacgtttgttgaagaaatccgga
atcaagagtgaggcaattcacggggataaatcacaaggacaacgccagcgagctttgtcg
aattttaaggcaggagctatccgggtgatggtggccactgacattgcagctcgaggaatt
gatattcaggagttggagattgtcataaattatgatctgcctgatgtggctgaaacatac
gtacatcgtatcgggcgcaccgggcgtgcgggacatctcggtacggcggtgacgttttgt
tcggaagaggaacagtctaagattcgggaaatccaagttctaactggcaagaaaatcaat
cggttgtcttttcaagcatga
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