Brevundimonas vitisensis: JIP62_01185
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Entry
JIP62_01185 CDS
T07812
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bvit
Brevundimonas vitisensis
Pathway
bvit03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bvit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
JIP62_01185 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bvit03400
]
JIP62_01185 (ligD)
Enzymes [BR:
bvit01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
JIP62_01185 (ligD)
DNA repair and recombination proteins [BR:
bvit03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
JIP62_01185 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QQQ18794
LinkDB
All DBs
Position
complement(233344..235911)
Genome browser
AA seq
855 aa
AA seq
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MRGELKTYQAKRRFGETPEPKGAKAKRRGKAPLRFLIQRHAATRLHYDFRIEHDGVLKSW
AVTKAPSRDPAIKRLAVEVEDHPLDYGNFEGTIPGGNYGAGTVQMWDTGTWTPQHPDTLE
ADFAKGSIKMFLDGERLKGGWALVRLKSDRGKPSKRNNWLLIKEKDDHAVPGEADALAEI
DASVTTGRSLAEIAEGTDQWTKSKPTGRKAPKPPTPRSSSAKNRPPAFVPIQLCKVVDHP
PGAAGWAHEIKFDGYRIQIGIGGGKAILRTRNGLDWTDRFPDLAADASTWPDAVIDGELC
ALDDDHMPDFPALQAAIADGQTGSLVYFAFDLLFEGDEDLRKLPLSHRKARLQAYVDRVG
KTDADRLRYVEHFATTGQAVLESACRMDLEGVISKKLDAPYHAGRSASWVKSKCRGRDEV
VIGGWSSEGGTRFRSLLVGVRDKGGLRYLGRVGTGYGEAVVKRLMPALKAAAADQTPFAG
ANAPKGGRDIHWLKPVLVAEVEHGGYTESGALRQAAFKGLREDKPAAEVTEPPQPPTEMK
STATVHSPSAPSGKRGKVVVAGVTLSNPDKILWPAVGDHPAITKADLARYYEAAAERLLP
HVGDRPTSIIRAPDGIDGEMFFQRHAMAGSNPRLKLIDVQARTPYVAAVDVGGLVAIAQS
GGLELHPWGCKPGDPEVPDQVTFDLDPDEGLDFADVIAAAKAVKAKLEALDLPAFVKTTG
GKGLHVVVPIRTDARSRITWDQNKAFAKALAETLRAGAPDRFTTTLAKKARGGKIFIDYL
RNGRMATAVAPWSPRARPGAGIAFPLSWGQVRSGLDPSAFNLWTYPSLLRKPDPWEDFRP
SAASLKKALKALGVT
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcggcgagctgaaaacctatcaggccaagcgccgcttcggcgaaacgcccgagccc
aaaggcgccaaggcgaagcggcgcggcaaggctccgctgcggttcctgatccagcgtcac
gcggcgacgcggctgcactatgactttcggatcgaacacgacggcgtgctgaagtcctgg
gccgtgaccaaggccccgtcccgcgatccggccatcaagcggctggccgtcgaggtggaa
gaccatcctctggactatggcaatttcgaagggacgattccgggcggcaactatggcgcc
ggtacggtccagatgtgggacaccggcacctggaccccccagcaccccgacaccctcgag
gctgattttgccaaggggtccatcaagatgttcctggacggcgaacggttgaagggcggc
tgggccctggtccggttgaagtccgatcggggtaaaccgtccaagcgcaacaactggctg
ctgatcaaggaaaaggacgaccacgccgtccctggcgaagccgacgccctggccgagatc
gacgcctcggtcaccaccggacgctccctggccgagatcgcggagggcaccgaccagtgg
acgaagtccaagccgacgggccgcaaggcccctaagcctcccaccccacgctcaagcagc
gcaaagaacaggcctccggccttcgtgccgatccagctgtgcaaggtcgtcgaccatccc
cccggcgcggcgggctgggcccatgagatcaagttcgacggctatcgcatccagatcggg
atcgggggcggaaaggcgatcctgcgcactcgcaacggccttgactggaccgatcgcttt
cccgacctggccgccgatgccagcacctggccggatgcggtgatcgacggcgaactgtgt
gcccttgatgacgaccatatgccggacttcccggcgcttcaggccgcgatcgcggacggc
caaaccggctccctcgtctatttcgccttcgatctgctgttcgaaggcgatgaagacctt
cgcaaactgccgctgtcccatcgcaaggcccggcttcaggcgtacgtcgaccgggtgggc
aaaaccgatgctgaccgcctgcgctatgtcgagcatttcgctaccaccggccaggccgtc
ctggagagcgcctgccggatggatctggaaggcgtcatctccaagaagctggacgccccc
tatcacgcgggtcgctcggccagttgggtcaagtccaaatgccgcggccgggacgaggtc
gtcatcggcggctggtcgtcggaagggggtacccgcttccgctcgctgctcgtcggggtg
cgcgacaagggcgggctgcgctatctgggtcgcgtcgggaccggctatggcgaggcggtg
gtcaaacgcctgatgcccgcactcaaagctgcggcggcagaccagacgccctttgctggc
gcaaacgcgccaaagggcggtcgcgacattcactggctgaaaccggtcctggtcgcagag
gtcgaacacggcggctacaccgaaagcggagccctgcgtcaggcggccttcaaggggttg
cgcgaggacaagcctgcggccgaagtcaccgaacctcctcagccgccgaccgaaatgaag
tcgaccgcgaccgtccactctccctcggcaccctctggcaagcgcggcaaggttgtcgtc
gccggggtcaccctgtccaaccctgacaagatcctttggccggccgtgggcgaccaccct
gccatcaccaaggccgatcttgcccgttattatgaagcggcggccgaacgcctgctgcct
cacgtcggcgaccgccccacctccatcatccgcgcacccgacggcatcgatggcgagatg
ttttttcagcggcacgccatggccggttcaaacccccggctgaagctcatcgacgtccag
gcccgcacgccctatgtcgccgcggtcgatgtcgggggcctggtggccattgcgcagtcc
ggcgggctggagctccacccctggggctgcaagcccggcgatcccgaggttcccgatcag
gtcaccttcgacctcgatcccgacgagggtctggatttcgctgatgtcatcgcggccgcc
aaggcagtgaaggcaaaactggaggcgctcgaccttccggccttcgtcaagacgacgggc
ggcaagggcctccacgtcgtcgtcccgatccggacagatgcccgcagtcgtatcacttgg
gatcagaacaaggcctttgccaaggccctggcagagaccctccgtgccggcgcacccgac
cgtttcaccaccaccctggccaagaaggcgcggggcggaaagatcttcatcgactatctg
cgcaacggccgcatggccaccgccgttgccccgtggtcgccccgcgcccggcccggcgcg
ggcatcgccttcccactgtcctgggggcaggttcggtccggcctggacccgtcggccttc
aacctgtggacctatccatccctgcttagaaagccagatccgtgggaggatttccgcccc
tcggcggccagcctgaaaaaggcactcaaggccctgggcgtgacctaa
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