Brevundimonas vitisensis: JIP62_02935
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Entry
JIP62_02935 CDS
T07812
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bvit
Brevundimonas vitisensis
Pathway
bvit03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bvit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JIP62_02935 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bvit03400
]
JIP62_02935 (mfd)
Enzymes [BR:
bvit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JIP62_02935 (mfd)
DNA repair and recombination proteins [BR:
bvit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JIP62_02935 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
MFD_D3
UB2H
SecA_DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QQQ19098
LinkDB
All DBs
Position
complement(586007..589444)
Genome browser
AA seq
1145 aa
AA seq
DB search
MSPLRSDIELGGAPEGLDALVVAEQLASSGGLGLFVARDFNRMGTFVQAFRFFSKDIEIL
EFPAWDCLPYDRLSPSSAVSAERMAALTRLAQRRPGDPPLMVVTTVAAATQRTPPREVTQ
SAGFETVVGRDLDTAALERYFSVNGYMRASTVSERGEYAVRGGVIDVYPPGFPEPVRLDM
FGSELESIRTFDPATQRSTGQKTTVALAPVSEALLDAETISRFRTGYLALFGAAGDDPLY
AAVSEGARRQGMEHWLPLLYERLETLFDYLPDNASIYLDHQAEAARADRWTLTADAYDAR
AEASRTRGGAAHRALPPSRLYLDEAEWNGALAGRQVRRLSPFAAGAEDAGGRLGRAFTTE
RAQDSVNLFEAVAAHAAALKEDGQRVLFASWTEGSSDRLAVMLADHGLEPVIAVRDWSDV
QAAPPGMILRGVLPVEHGFTTDTLAVISETDILGDRLARPRRKRRASNFLAEASALTTGD
LVVHLDHGIGRYEGLKTLEIQDAPHDCLELLYAGDSKLYLPVENIDLLTRYGTESEGVQL
DRLGGAGWQGRKAKARARLRDMAEGLIALAAKRSLRTSDAVVPPAGLFDEFCARFPYEET
DDQLNAIGDVLEDLGKGMPMDRLICGDVGFGKTEVAIRAAFVVAMSGQQVAIVCPTTLLA
RQHFRTFSERFAGWPIKVRHLSRMVTAKEASETRAGLKDGTFEIVVGTHAVLSEQVGFKD
LGLVIVDEEQHFGVKHKEKLKSLRADVHLLTLTATPIPRTLQMALSGIREMSIIATPPVD
RLAVRTYVTPWDPVLVREALLREKYRGGQAYYVVPRLSDLPDIEQFLREQVPEVKFVVGH
GQMSPTQLEDVMSAFYDGSYDVLLSTTIVESGLDIPTANTLIVHKADMFGLAQLHQIRGR
IGRSKARAFAYLTTPPDKPMTLSAERRLQVLQSLDNLGAGFQLASHDLDQRGGGNLLGDE
QSGHIREVGVELYQQMLEDAVASLREAGAEGLVDRGWSPAINVGAAVLIPEDYVPDLNVR
LSLYRRLSDAENTETREALAAELIDRFGPLPDEAKQLLRIVGIKANCKIACIERIDIGPK
GAVLTLRDNRFPNPAGLVGLIQKNHISWKIRPDQKIVVKGDWPTSDDRLKVAERITGDLA
RVAVA
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
ttgagtccgttgaggtccgatatcgagctgggcggcgcgcccgaggggctggatgctctg
gtcgttgccgaacagctggcgtcgtccggcgggctcggcttgttcgtcgcacgcgacttc
aaccgtatgggcaccttcgtccaggcgttccggtttttctcaaaagacattgaaatactg
gagtttcctgcgtgggactgccttccctatgatcgcctgagcccgtcatcggcggtgtcg
gccgagcggatggcggccctgacccggctggcccagcgccgcccgggggatccgcctctg
atggtggtgaccaccgtcgccgccgcaacccagcgcacgccgccgcgcgaggtcacccag
agcgcggggttcgagaccgtggtgggccgcgatctggatacggcagcgctggagcgttac
ttcagcgtcaatggctacatgcgggcctcgaccgtttcggagcgcggcgagtatgccgtg
cgcggtggggtcatcgacgtctatccgccgggctttcccgagccggtccgcctggacatg
ttcggctccgagcttgagtccatccgaacattcgatcctgccacccagcgctcgaccggc
cagaagacgacggtggccctggcccccgtgtccgaagccctgctggatgccgagaccatt
tcacgcttccgcacgggctatctggctctgttcggggcggccggtgacgatcccctttat
gccgccgtcagtgagggcgcgcgccgccagggcatggagcactggctgccgctgctttac
gagcggcttgagactttgttcgattatctgccggacaatgcgtccatctacctcgatcat
caggccgaggctgcgcgggcggatcgttggaccctgacggccgatgcctatgacgcgcgg
gccgaggcgtcccgcacgcgcggcggcgcggcgcacagggccctgccgccgtcacggctg
tatctggacgaagcggaatggaacggtgccttggccggccgacaggtccgccgcctcagc
ccattcgcagcgggagcagaggatgccggtggacgactgggccgggccttcaccaccgaa
cgcgcccaggacagcgtcaatctgttcgaggccgtcgccgcccatgccgcggccttgaag
gaggacgggcagcgcgttcttttcgcctcctggaccgaaggctcgtcggatcgactggcc
gtcatgctggccgatcatgggctggagccggtcattgcggttcgggactggtcggatgtt
caggcggcgccgccgggcatgatccttcggggcgtcctgcctgtcgagcacggcttcacc
accgacacgcttgcggtgatttccgagaccgacatcctgggcgatcgcctcgctcgtccg
cggcgtaagcgccgggcgtcgaacttcctggcagaagcctcagccctgaccaccggcgat
ctggtcgtgcacctggatcacggcatcgggcggtatgagggcctgaaaaccctggagatc
caggacgcaccgcacgactgtcttgagctgttgtatgccggcgacagcaaactctacctg
ccggttgaaaatattgaccttttgacgcgctatgggaccgagtccgaaggcgtgcaactg
gaccgccttggtggggcgggatggcaggggcgcaaggccaaggcgcgcgcccggcttcgt
gacatggccgagggtcttattgccctggccgccaagcgctcgcttcggaccagcgatgcg
gtggtgccgcccgccggtctgttcgacgaattctgcgcccgcttcccctacgaggagacc
gacgatcagctgaacgccatcggtgacgtgctggaagacctgggcaagggcatgcccatg
gatcgactgatctgcggcgatgtcggcttcggaaagaccgaggtcgccatccgcgcggcc
ttcgttgtcgccatgagcggacaacaggtggccatcgtctgcccgaccaccctgttggcg
cgccagcacttccgtaccttctcggagcggttcgcgggttggccgatcaaggtgcgacac
ctgtcgcggatggtcacggccaaggaagcgtctgagacgcgtgccgggctcaaggacggc
acattcgagatcgtggtcgggacccacgccgttctcagcgaacaggttgggttcaaggac
ttgggccttgttatcgttgacgaagagcagcacttcggcgtcaagcacaaggagaagctg
aagtccctgcgggccgacgttcacctgctgaccctcacggccacgccgattccccggacc
ttgcagatggccttgtcgggcattcgcgagatgtcgatcatcgcaacgccaccggtcgat
cgcctggccgttcggacctatgtgaccccgtgggatccggtcctggtacgggaggccttg
ctgcgcgagaagtaccgcgggggccaggcctactatgtcgtgccgcgcctgtcggacctg
ccggacatcgagcagttccttcgcgagcaggtgccagaggtcaagttcgtcgtcgggcat
ggccagatgagcccgacccagctggaagacgtgatgagcgccttctacgacggctcctat
gacgtgctgctgtcaacgacgatcgttgagagcggcctcgacatccccacggccaatacc
ctgatcgtgcacaaggccgacatgttcggcctggcgcagctgcaccagattcgcggacgg
atcgggcggtccaaggcgcgagccttcgcctacctgacgacgccgcccgacaagccgatg
acgctttcggcggaacggcggctgcaggtcctgcagtcgctggacaatctgggggcaggg
ttccagctggccagccacgacctggaccaacgcggtggcggcaatctgctgggcgacgaa
cagtcgggccatatccgcgaagtcggcgtcgaactgtatcagcagatgctggaagatgcg
gtggcttcgctgcgcgaagcgggggccgagggcttggtcgaccgtgggtggtcgcccgcc
atcaatgtcggcgcggccgtattgattccagaggattacgtccccgatctgaacgtccgt
cttagcctgtatcgccgtctgtccgatgccgagaacaccgagacgcgcgaagctctggct
gccgaattgatcgaccggtttggcccgcttccggacgaggccaagcagttgctgcgcatc
gtgggcatcaaggcgaactgcaagatcgcctgcatcgagcgcatcgacatcgggcccaag
ggggcggtcctgaccctgcgggataaccgcttccccaatccggccggcctggtcggtctg
atccagaagaaccacatcagctggaagatccggcccgaccagaagatcgtggtcaagggc
gactggcccacgtcagacgaccgtctgaaagtggcggagcgcatcaccggcgatctggct
cgggtggcggtggcctaa
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