Brevundimonas vitisensis: JIP62_03395
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Entry
JIP62_03395 CDS
T07812
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bvit
Brevundimonas vitisensis
Pathway
bvit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JIP62_03395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvit03019
]
JIP62_03395
03009 Ribosome biogenesis [BR:
bvit03009
]
JIP62_03395
Enzymes [BR:
bvit01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
JIP62_03395
Messenger RNA biogenesis [BR:
bvit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JIP62_03395
Ribosome biogenesis [BR:
bvit03009
]
Prokaryotic type
rRNA processing factors
JIP62_03395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QQQ19177
UniProt:
A0ABX7BNL4
LinkDB
All DBs
Position
681351..684020
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AA seq
889 aa
AA seq
DB search
MSKTMLIDAAHAEETRVAIVEGRQVEEFDFESKTRRQLRGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFNEIHPDYYQIPTADREAIMAEAASDDDHDDDLGRESSDDDHDSEGKLAD
EERLKRRLMRRYKIQDVIRRRQILLVQVVKDERGGKGAALTTWLSLAGRYCVLMPNTGKG
GGISRKITQATDRKRLKAAAAALDVPPGMGLIIRTAGAKRTKAEISRDYEYLLRLWETIR
ETTLSSNAPSLIYEEENLVRRAVRDMFDKDFDGIQVEGVEGFKEARDFMRVLMPSQAKKV
HLYQGSKPLFAANGIEELLTQIHQPVVPLKSGGYLVINQTEALVAIDVNSGKSTKERNVE
ATAFKTNMEAAVEAARQLRLRDLAGLIVIDFIDMDEPKNNRSVEKVLKDALAKDRARIQM
GKISSFGLMEISRQRRRLGVIEGATEVCAHCQGAGRIRSAESAALMTLRAVDIEAGRNGA
GVINLRVSTAIALYILNHKREYLQWLAKTRGLKVVVLIDDALGQGDHAIERIETNEDFVP
EEVAVPAIDLDDDFDDSAYADEDDFDDEDEEFGDDEDEAQLDREDSDDDEPRERAERSEG
EGESGGGRRRRRRRGGRRDDESSDGVVAALAEDDDSEAARRRRRGRRGGRRVREDGDRDG
FTWVRGRTPSLEDPYVWFDPINPMGDRDQSAERAEKVVAGDVEEMVGERPDGERGEREGR
GRRRRRGRGRGGDRSVTHEDKVEARATGEGMPIEGDPSRPIAVEAASEDGSTSDDVAPTA
VAEPKRRRVRRKVASADVPSIEPVELDVTPAEAAIEVAETVETEEPEQVEAPVPVASEPA
APKAAAEAEPVVEAEPEPAPVVDVQALIAEDPAQITTPAPKPKRGWWRR
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagaccatgttgatcgacgcggcccatgcggaagaaacccgcgtcgccatcgtc
gagggccgtcaggtcgaggaattcgactttgaatccaagacgcggcgccaactgcgcggc
aatatctatctggccaaggtcacgcgggtagaacccagcctccaggccgcgttcgttgag
tatggcggcaatcgccacggctttctggccttcaacgagatccaccccgactattatcaa
atcccgaccgccgaccgcgaagccatcatggccgaggcggcgtctgacgacgatcacgac
gacgacctgggccgcgaaagctcggacgacgatcatgattccgaaggcaagctggccgac
gaagagcggctgaagcggcgcttgatgcggcgctacaagatccaggacgtgatccggcgc
cggcagatcctgctggttcaggtcgtcaaggacgagcgcggcggcaagggcgcggccctg
accacctggctgtccctggccggtcgctactgcgtgctgatgcccaacaccggcaagggc
ggcggcatttcgcgcaagatcacccaggccacggatcgcaagcgcctgaaggcggctgcg
gctgcgctggacgtgccgcccggcatgggcctgatcatccgcacggcaggtgccaagcgg
accaaggccgagatcagccgcgactacgagtatctgctgcgcctgtgggagacgatccgc
gagacgacgctgagctccaacgccccgtcgctgatctatgaagaggaaaacctggtccgg
cgcgcggtgcgcgacatgttcgacaaggatttcgacgggatccaagtcgagggcgtcgag
ggcttcaaggaggcgcgcgacttcatgcgggtgctgatgccctcgcaggccaagaaggtg
catctgtaccaggggtccaagcccctgttcgccgccaacggcatcgaggaactgctgacg
cagatccaccagccggtcgtgccgcttaagtcgggcggctatctggtgatcaaccagacc
gaggccctggtcgccatcgacgtcaactccggcaagtcgaccaaggaacgcaacgtcgag
gccacggcgttcaagaccaatatggaagcggcggtcgaggcggcgcggcagctgcgcctg
cgcgacctggccgggctgatcgtgatcgacttcatcgatatggatgagccgaagaacaat
cggtcggtcgagaaggtgctgaaggacgcgctggccaaggatcgggcccgcatccagatg
ggcaagatttcgagcttcggcctaatggaaatcagccgtcagcgtcgccgtctgggcgtg
atcgagggcgcgaccgaggtctgtgcgcactgccagggcgcgggccgcatccgctcggcg
gaatcggcggcgctgatgacgctgcgggccgtggatatcgaggcgggccggaacggtgcc
ggcgtgatcaatctgcgcgtctcgaccgccatcgccctctacatcctgaaccacaagcgg
gagtatctgcagtggttggcgaaaacgcgcggactgaaggtggtggtcctgatcgacgac
gccctgggacagggcgatcacgcgatcgagcggatcgaaaccaatgaggacttcgtgccg
gaagaggtcgcggtgcccgcgatcgatctggacgatgatttcgacgactccgcctatgcc
gacgaagacgacttcgacgacgaggatgaggaattcggcgacgacgaggacgaggcccag
ctggaccgcgaggacagcgacgatgacgagccgcgcgaacgggccgaacggtccgagggc
gagggtgaatcgggcggcggccgccgccgccgccgccgccggggcggccgccgcgacgac
gagtcctccgatggagtcgttgcggccctggccgaggatgacgacagcgaagcagcgcgt
cgccgcagacgtggccgccgcggaggacgccgtgtccgtgaggatggcgatcgcgacggc
ttcacctgggtccgcggccgcacgccgtcgctggaagacccctacgtctggttcgatccg
atcaatccgatgggcgaccgcgaccagtcagcggaacgggccgagaaggtcgtggccggt
gacgtcgaggagatggtcggcgagcgtcccgacggagaacgcggcgagcgcgaaggccgt
gggcggcgtcgtcgccgtggtcgcggtcgtggcggcgaccggagtgtgacgcacgaggac
aaggtcgaggcccgcgccactggcgaaggcatgccgatcgagggtgaccccagccgtccg
atcgccgtcgaggcggcatcggaagatggctcgacctcggacgacgtggcccccacggca
gtggcggagcccaagcgtcgccgcgtgcgccgcaaggtcgcctctgcggacgtcccgagc
atcgagcctgtggaactggatgtgaccccggcggaagcagcgatcgaggtcgccgaaacc
gtcgaaaccgaggagccggagcaggtcgaggctcccgtcccggtcgcgtcggagccggcg
gcaccgaaggccgcggctgaggccgaaccggtggtcgaggcagagcccgaacctgcccct
gtggtcgatgttcaggccctgattgccgaggatcccgcccagatcaccacccctgcgcca
aagcccaaacgtgggtggtggcgtcgctga
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