Brevundimonas vitisensis: JIP62_04135
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Entry
JIP62_04135 CDS
T07812
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bvit
Brevundimonas vitisensis
Pathway
bvit03030
DNA replication
bvit03430
Mismatch repair
bvit03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bvit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JIP62_04135 (dnaE)
03430 Mismatch repair
JIP62_04135 (dnaE)
03440 Homologous recombination
JIP62_04135 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bvit03032
]
JIP62_04135 (dnaE)
03400 DNA repair and recombination proteins [BR:
bvit03400
]
JIP62_04135 (dnaE)
Enzymes [BR:
bvit01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JIP62_04135 (dnaE)
DNA replication proteins [BR:
bvit03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JIP62_04135 (dnaE)
DNA repair and recombination proteins [BR:
bvit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JIP62_04135 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
Motif
Other DBs
NCBI-ProteinID:
QQQ20001
LinkDB
All DBs
Position
complement(819976..823401)
Genome browser
AA seq
1141 aa
AA seq
DB search
MRVRSAYSLLEGAIKAGKIGRLAADAGMPAAAVADRANLCGALEFAENARDAGVQPIMAC
TLPVTGLGGRISARWGRVPTIVLIVQNEAGWLNLCALSSAAYMAADETGEPGVAWEQVVA
RAEGLILLSGGPDGPVDPLFVQGKTAEAQAALAEMSGAFGDRFYVELQRHGLPSEAVAER
GLVEWAYAKDVPLVATNDVHFAKQAQGRSHEALLCIADGAFMGQDDRRRVTDQHWFKPPA
AMRELFADLPEACDNTIDIARRCAFVVQTRAPILPRFEAGAGRSEPDELAHQAREGLKVR
LSQVTPAAPEADYWTRLEWEVSIIQQMGFPGYFLIVSDFIKWAKGHGIPVGPGRGSGAGS
LVAWALTITDLDPLRFGLLFERFLNPERVSMPDFDIDFCQERREEVIAYVQQRYGDDRVA
QIITFGTLQARAVLRDVGRVLQMPLGQVDRLAKMIPNNPANPTTLAQAIEIEPRLKEARA
AEASVASLLDTALELEGLYRNASTHAAGIVIGDRPLVELAPLYKDPRSDIPATQFNMKWV
EAAGLVKFDFLGLKTLTVLDRARAYLERRGAAPDWNGLPLDDGRTYELMASGQTVGVFQL
ESQGMRDTLRKMRCGSIEEITALISLYRPGPMEMIDTYIDRKFGRAEVDYLHPTLTEVLQ
ETYGVIIYQEQVMKIAQILAGYSLGEADLLRRAMGKKKPEEMAQQKVRFAAGAAEKGVPE
AKAESIFELVAKFAGYGFNKSHAAAYALISFQTGWLKANHPVEFFAASMSLDLSNTDKLA
VFYQDARRFGVPVRVPDINRSSADFDVSYEGGEGAVLYALGAIRNVGLEAMRHVVEVREA
GGRFTDIFDFLERVDPRSVNKRALEGLAKAGAFDSIHPNRRQLVEQADTLMAYAQSVAAE
RASSQVSLFGADQVGAARPRLASVEPWAGPDRLDPELAAVGFYLSGHPLEDLTSTLKRKR
VTFVAEATPLAEAGHEAFIMAGVVRRKQERASARTGEKFAFVTFSDPTGEFECLFPPEQL
RQYREVLEAGAAVMLKIRAKCSDGEVRFFGDEAKPMDTIIDDASVGLRVHVSGRLADAEA
LRARLDRSRAEAGKAGGEVSLIAALENRSEVEIRLPGRYRLDASVRGALKSAPGVVLLED
A
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
ctgcgcgtgcgttcggcctattcgctgctggagggcgcgatcaaggccggcaagatcggg
cggctggctgcggacgcggggatgcctgcggcggcggtggcggaccgggccaatctgtgc
ggagcgctggagtttgccgagaacgcgcgcgacgccggcgtgcagccgatcatggcctgc
accctgccggttaccggtctgggcgggcggatatctgcccgctgggggcgcgtgcccacc
atcgtcctgatcgtccagaacgaggccggttggctgaatctgtgtgccttgtcgtcagcg
gcctatatggcggcggatgaaaccggcgagccgggcgtggcttgggagcaggtggtggcc
cgcgccgaggggctgatcctgttgtccggcggccccgacggaccggtcgacccgttgttc
gtgcagggcaagacagccgaggcgcaggcggcccttgccgagatgtccggcgcattcggt
gatcgtttctatgtcgaactgcagcgtcacggcttgccgagcgaggccgtggccgagcgg
ggtctcgtcgaatgggcctatgccaaggacgtgcccctggtcgcgaccaatgacgttcat
tttgccaaacaggcgcaagggcgctcgcatgaggcccttttgtgcatcgccgacggggcc
ttcatgggccaggacgaccggcgccgggttacggaccagcactggttcaaaccgccggcg
gccatgcgtgagctgttcgccgatctgcccgaagcctgcgacaacaccatcgacatcgcc
cggcgctgtgccttcgtggttcagacccgtgcgccgatcctgcccaggttcgaggcgggc
gcaggccgatccgagccggacgaactggcccatcaggcccgcgaggggctgaaggtccgc
ctgtcccaggtgacgcccgcggcacccgaggccgactattggacgcggctggaatgggag
gtgtccatcatccagcagatggggttccccggttatttcctgatcgtgtcggacttcatc
aaatgggccaaggggcacggtattccggtcggaccgggtcggggttctggggccggatcg
ctggtggcctgggccctgaccatcaccgacctggatcccttgcggttcggcctgctgttc
gagcgcttcctgaatccggagcgggtgtccatgcccgacttcgacatcgacttctgtcag
gagcggcgcgaggaagtgatcgcctatgtgcagcagcgctatggcgacgatcgggtggcc
cagatcatcaccttcggcaccctgcaggcgcgcgcggtgctgcgcgacgtcggccgggtg
ctgcagatgccgctgggccaggtcgatcgcctggccaagatgatcccgaacaatccggcc
aatccgaccaccctggcccaggccatcgagatcgagcctcgcctgaaggaggcgcgggct
gccgaggcgtctgtggcgtcgctgctggacaccgcgctggagctggaggggctgtatcgc
aatgcctcgacccacgccgccggcatcgtgatcggtgaccgtcccctggtcgagctggct
ccgctttacaaggatccccggtccgacattccggccacccagttcaacatgaaatgggtc
gaggcggcgggtctggtgaagttcgacttcctcggcctgaagaccctgacggtactggac
cgggcgcgcgcctatctggaacgacgcggggctgccccggactggaacggcctgccgctg
gacgatgggcgcacctatgagctgatggcctcgggtcagacggtcggcgtgttccagctg
gaaagccagggcatgcgcgacaccctgcgcaagatgcgctgcggctccatcgaggaaatc
accgcgctgatctccctctatcggccggggccgatggaaatgatcgacacctatatcgac
cggaagttcggccgggccgaggtcgattacctgcaccccaccctgaccgaggtgctgcag
gagacctatggcgtcatcatctaccaggaacaggtgatgaagatcgcccagatcctggcg
ggttatagcctgggcgaggccgacctgctgcgccgggccatgggcaagaaaaagcccgag
gagatggcccagcagaaggtccgctttgccgccggtgccgccgagaagggcgtgcccgag
gccaaggcagagtcgatcttcgaactggtggccaagtttgccggctacggcttcaacaag
tcccacgcagccgcctatgccctgatcagcttccagaccggctggttgaaggctaatcat
ccggtcgagttctttgccgcctccatgtcgctggacctgtccaataccgacaagctggcg
gtcttctaccaggatgcccgccggttcggcgttccggtgcgggtgcccgacatcaatcgg
tcctctgccgacttcgacgtgtcctacgagggcggggagggggctgtcctctatgctctg
ggggccatccgcaacgtcggcctggaggccatgcgtcatgtggtcgaggttcgtgaggct
ggcggccggttcaccgatatcttcgacttcctggagcgggtcgacccgcgcagcgtgaac
aagagggcgctggaaggcttggccaaggcgggggcgttcgactccatccacccgaaccgg
cgtcagctcgtggaacaggcggacaccctgatggcctatgcccagagcgtggcggccgag
cgcgcctcgtcccaggtcagtctgtttggtgccgatcaggtcggggcggcgcggccgagg
ttggccagtgtcgagccttgggccgggccggaccggctggacccggaactggcggcggtc
ggcttctatctgtcaggccacccgctggaagacctgacctcgacgctgaagcgcaagcgt
gtgaccttcgtggccgaggcgacacctctggcagaggcgggacatgaggccttcatcatg
gccggcgtcgtgcgccgcaagcaggagcgagccagcgcccgcaccggcgagaagttcgcc
ttcgtcaccttttcggacccgaccggcgagttcgagtgcctgtttccgcccgaacagctg
cgccagtaccgcgaggtactggaggccggggcggccgtgatgctgaaaatccgcgccaaa
tgttcggacggagaggttcggttcttcggcgatgaggccaagccgatggacacgatcatc
gacgatgcgagcgtgggcctgcgggtccatgtgtcgggacggttggccgatgctgaggca
ctgcgggcccggctggaccggtcgcgcgccgaggcgggtaaggcggggggcgaggtaagc
ctgatcgccgccctggagaaccgcagcgaggtcgaaatccgcctgccgggccgttaccgc
ctggacgcctcggtgcgcggtgcgctgaaatcggcaccgggcgtggtgcttctggaggat
gcgtga
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