Brevundimonas vitisensis: JIP62_04155
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Entry
JIP62_04155 CDS
T07812
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
bvit
Brevundimonas vitisensis
Brite
KEGG Orthology (KO) [BR:
bvit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bvit03016
]
JIP62_04155 (rnd)
Enzymes [BR:
bvit01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
JIP62_04155 (rnd)
Transfer RNA biogenesis [BR:
bvit03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
JIP62_04155 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
QQQ19310
LinkDB
All DBs
Position
complement(828420..829568)
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AA seq
382 aa
AA seq
DB search
MTPITTNDALIEFCARLSGAPFVAVDTEFMRETTYWPKLCLIQAATPEHAAIIDPLAEGL
DLSPFLDVLRDESIVKVFHAARQDVEIFVRLGAMPRPMFDSQVAAMAAGFGDQVSYEALV
RQMLKQELDKGSRFTDWSRRPLSDAQLVYALGDVTHLAALFPKLRERLKKEGRLDWVTAE
MEDLVDPALYDTTPENAWKRLRPKKYSAKYLAAFVATAVWRERAAQERDQPRGRILKDEA
IDEIAAQGPTDPEAFNRLRSVPKGFGASRLGLELSAELKRVLADPEAHAPRLERPAHNQP
APPSVVELLKVLLKAKSDNAGVATKLISSVADLEKIAIDDQADVEALKGWRRQLFGEDAL
KLKRGEIALVLNGARVEVVEIE
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atgacgccgatcactaccaatgacgcgctgatcgaattctgcgcgcgcctttccggggcc
ccgtttgtcgcggtcgataccgagttcatgcgggaaacgacctattggcccaagctgtgc
ctgattcaggcggcgacgcccgagcatgccgcgatcatcgatccgctggccgaaggtctg
gatctgtcgcccttcctcgacgtgctgcgcgacgaatcgatcgtcaaggtgttccacgcg
gcacgacaggacgtcgaaatctttgtgcgtctgggggcaatgcccaggccgatgttcgac
agtcaggtcgccgccatggcggccggcttcggcgatcaggtcagctatgaggctctggtc
cgccagatgctcaagcaggagctggataagggaagccggttcaccgactggtcccgccgc
cccttgtcggatgcacaactggtctatgccctgggcgacgtcacccatctggccgccctg
tttcccaagttgcgcgagcgcctgaagaaggaaggccggctggactgggtcacggccgag
atggaggatctggtcgatccggccctgtacgacaccacgcccgagaatgcgtggaagcgg
ctgcggcccaagaaatactccgccaaatatctggcggcctttgtcgcgacggcggtctgg
cgcgagcgcgcggcccaggagcgcgaccagccccgtggccgtatcctgaaggacgaggcc
atcgacgaaatcgccgcccaggggccgaccgatcccgaggccttcaaccggctgcggtcc
gttcccaaggggttcggcgcgtcgcgtctgggcctggagctgagtgccgaactgaagcgg
gtgctggccgatccggaggcgcatgctccgcgtctggagcgtccggcgcacaatcagccg
gcgccgccgtccgtggtcgagctgctcaaagtgctgctcaaggccaagagcgacaatgcc
ggggtggcaaccaagctgatctcgtccgtcgccgatctcgaaaagattgccatcgacgac
caggcagacgtcgaggcgctgaaaggctggcggcgtcagctgttcggcgaggatgcgctg
aagctgaaacgtggcgaaatcgctctggtcctgaacggcgctcgggtcgaggtcgtcgag
atcgagtag
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