Heyndrickxia vini: I5776_19660
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Entry
I5776_19660 CDS
T07201
Symbol
sigB
Name
(GenBank) RNA polymerase sigma factor SigB
KO
K03090
RNA polymerase sigma-B factor
Organism
bvj
Heyndrickxia vini
Brite
KEGG Orthology (KO) [BR:
bvj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bvj03021
]
I5776_19660 (sigB)
Transcription machinery [BR:
bvj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
I5776_19660 (sigB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r3
Sigma70_r2
Sigma70_r4_2
DUF1492
HTH_23
Sigma70_ECF
HNF-1_N
DUF134
HTH_3
HTH_28
GerE
HTH_16
IF2_N
HTH_37
UPF0122
KORA
HTH_24
Motif
Other DBs
NCBI-ProteinID:
QQZ09154
LinkDB
All DBs
Position
complement(3960654..3961451)
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AA seq
265 aa
AA seq
DB search
MPKLSQPNQYGKEKINDLIKIFQENGDMDAQDALVAHYKNLVESISWKYSKGKTYQEDIF
QVGVLGLLGAIRRYDATYGKSFEAFAIPTIIGEIKRFLRDKTWSVHVPRRIKELGPKIKT
TSEELTVLLQRSPRIDEIAAKLDVSEEEILEAMEMGKSYHALSVDHSIESDSDGSTVTLL
DIVGKEDTGFEKVNQRMVLDKVLHVLNERERKIIQLTYLDNLSQKETGDKLGISQMHVSR
IQRKAIKKLRDAINEESRDRKSSSV
NT seq
798 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaattgtctcaacctaatcaatatggaaaagaaaaaattaatgacttaataaag
atatttcaagaaaacggagatatggacgcacaggatgccctcgttgcacattacaaaaat
ttagtggagtccatatcttggaaatattcaaaaggcaaaacctatcaggaggatattttt
caggtaggcgtactaggattacttggtgcgataagacgttatgatgccacttatgggaaa
agctttgaggcttttgcgattccaactataattggagaaatcaaacgatttttacgtgat
aaaacttggagtgtccatgttccacgtcgtattaaggaacttggcccgaaaataaaaaca
acttcagaagaactaactgtcttattacaacggtccccccgaattgatgaaatcgcggca
aagttagatgtttccgaagaggagattcttgaagcgatggaaatggggaaaagttatcat
gccctttctgtagaccactccatcgaatctgattctgatggaagtactgttactctttta
gatatagtgggcaaggaagatacaggttttgaaaaagtaaatcaacggatggttcttgat
aaggtactgcatgttttaaatgaacgagagcgaaaaattattcaattgacttatctagac
aatttgagtcaaaaggagacgggggacaaactaggtatttctcaaatgcatgtttcccgt
atacagagaaaagcaattaagaaattacgtgatgcaattaatgaagaatcacgagatagg
aagagttcatcggtatga
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