Bacillus vallismortis: B9C48_08480
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Entry
B9C48_08480 CDS
T04948
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bvm
Bacillus vallismortis
Pathway
bvm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B9C48_08480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvm03019
]
B9C48_08480
Messenger RNA biogenesis [BR:
bvm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B9C48_08480
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
ARM27859
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All DBs
Position
1674007..1675674
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AA seq
555 aa
AA seq
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MKKKNTENVRIIALGGVGEIGKNLYVIEIDSDIFVVDAGLMHPENEMLGIDVVIPDISYL
VERADRVKAIFLTHGHDENIGGVFYLLNKLSVPVYGTKLTLALLREKLKQYGHNRKADLR
EVHSKSVITFETTKVSFFKTIHSIPDSVGVSFKTSLGSIVCTGDFKFDQTPAYHQSCDIG
EIAKIGNSGVLALLSDSANAERPGYTPSEAYVSGEIADAMNNSENRVIIAVFASNINRIQ
QVIQAAVQNGRKLAIAGKNLQNVLQLGRKLGYIEAEDEMFIPVQDVKKYPKREVAIVTAG
SHGEPLAALTRMAKQAHKQLNIEEGDTVVIASTPIPGHELIYSKTVNLLARAGAQVIFAQ
KRVHVSGHGSQEELKLMLNLLKPKYLIPVNGEFRMQKAHSKIAEEIGMKRSDIFLIEKGD
VVEFRGQNVKIGDKVTYGNVLIDGLGVGDIGNIVLRDRRLLSQDGILIVVISLDKQKKNL
VSGPEIITRGFVYVRESEGLIVQATELVRSIVTEATETSAVEWSTLKQAMRDALNQFLYE
KTKRKPMIIPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaagaaaaatacagaaaacgtcagaattatcgcccttggcggcgttggagaaatt
gggaagaacctatatgtcattgaaattgactcagacatatttgtagtggatgcagggctg
atgcaccctgaaaatgaaatgctcggtattgatgtcgtcattccggatatttcctactta
gtagaacgggctgaccgcgtgaaggccatctttctgacacacgggcacgatgaaaacatc
gggggcgtcttttatttattgaacaagctgtcggtgccggtatacggaacgaagcttacg
cttgcattactgagagaaaaactcaagcagtacgggcataatcgaaaagctgatttgcgt
gaagttcattctaaatcagtcattacatttgaaacaacgaaagtatcgttctttaaaacg
attcacagtattccggattcagtgggagtcagcttcaaaacatcacttggctctattgta
tgcacgggagacttcaaatttgaccagacgcctgcttatcaccaatcatgtgatattggc
gaaattgccaaaatcggaaacagcggcgtgctcgccctgctttctgacagcgccaatgcg
gagcgcccgggatatactccgtcagaagcatatgtaagcggtgaaattgccgatgcgatg
aacaattcagaaaaccgtgtcatcattgctgtattcgcgtctaatatcaaccggatccag
caagtgatacaggctgccgtccagaacggccgcaaacttgcaatcgccggaaaaaatctg
caaaacgtgcttcagctggggcgcaagctcggctatattgaagccgaagatgaaatgttt
attcctgtacaggatgtgaaaaaatatccgaagcgggaagtggcaattgttacagccgga
agccatggtgagccgctggccgctcttacgcggatggctaagcaggcgcacaagcagctt
aacattgaagaaggagacaccgttgtcattgcatcaacaccgattccggggcatgaattg
atatattccaaaaccgtcaacctgcttgcccgcgccggcgctcaagtcattttcgcccaa
aaacgcgtgcatgtgtccggtcacggttcgcaggaagaattgaaactcatgcttaatttg
ctgaaaccgaaatatttaattccggttaacggtgaattcagaatgcaaaaagcgcattcc
aaaatcgcagaagagatcggcatgaaacgcagcgacattttcttgattgaaaaaggtgac
gtcgttgaattccgcggacagaatgtaaaaatcggggataaagtcacgtacggaaacgtt
ctgattgacggcctcggtgtcggcgacatcggcaacatcgtgctgagagaccgccgctta
ttgtcacaagacggcattctcatcgtcgtgatttcactcgataagcagaaaaagaacctc
gtatcaggtcctgagatcattacgcgcggtttcgtgtatgtcagagaatcagaaggttta
attgtacaagctactgagctcgtccgctctatcgtgactgaagcgacagaaacatctgcc
gtagaatggtccacgctgaaacaggcaatgcgtgatgcgctgaatcaattcctttatgaa
aaaacaaaacgcaagccgatgatcattccgatcattatggaagtataa
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