Bartonella vinsonii subsp. berkhoffii: BVwin_00060
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Entry
BVwin_00060 CDS
T02470
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
bvn
Bartonella vinsonii subsp. berkhoffii
Pathway
bvn03030
DNA replication
bvn03410
Base excision repair
bvn03420
Nucleotide excision repair
bvn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bvn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BVwin_00060 (polA)
03410 Base excision repair
BVwin_00060 (polA)
03420 Nucleotide excision repair
BVwin_00060 (polA)
03440 Homologous recombination
BVwin_00060 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bvn03032
]
BVwin_00060 (polA)
03400 DNA repair and recombination proteins [BR:
bvn03400
]
BVwin_00060 (polA)
Enzymes [BR:
bvn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BVwin_00060 (polA)
DNA replication proteins [BR:
bvn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BVwin_00060 (polA)
DNA repair and recombination proteins [BR:
bvn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
BVwin_00060 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BVwin_00060 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
HHH_5
NYN_YacP
WHD_BrxR
HHH_2
IMS_HHH
HHH
Motif
Other DBs
NCBI-ProteinID:
AGF75164
LinkDB
All DBs
Position
3930..6836
Genome browser
AA seq
968 aa
AA seq
DB search
MKTTDHLFLVDGSGYIFRAYYALPPLKRKRDGLPVGAVAGFCNMLWKLLCDARNTATGVV
PTHFAVIFDYSSDTFRKQIYPQYKANRETPPEDLIPQFALIRQATKAFNLPCIEKEGFEA
DDLIATYAQLATKVGTKTTIISSDKDLMQLVNAHVSLYDGMKDKHIGISEVIEKWGVAPE
KMVDLQALIGDSTDNVPGIPGIGPKTAAQLLDQFGTLDLLLQRISEVKQTKRRENLQAYS
EQAKISRELVRLKRDVPIDNSLDDFILESQDGPRLIAFLKAMEFTTLTRRVAEVTECDAA
VIDAADINVAWSDSTQEIDHEAKKAERVSSHGFSENSPQLLAQKRKDQAKTQKITRDTYT
TILDEEVLKEWLSEAQEQGFFAFDTETTSLDPLQAKLVGFSLALQPEKAAYVPLEHIEGG
DDLLGGGRIAGQIETQKALALLKPILENQAILKIGQNIKYDWLVMKQHGIVISSFDDTML
FSYALDAGTLTHNMDDLSVRWLGHKPIAYKDLTHNGKKITSFAQVDLQQATLYAAEDADV
TLRLWQVLKPQLVAQGMTKIYERFDRPLIEVLARMEERGILIDRQILLRLSEELAQAAFI
LEEEIYQLAGEKFNLASPKQLGDILFDKIGLLGGVKTKGGQWSTSAQTLEELAAEGHILP
RKIIDWRQLAKLKSTYTDALPSYILPKTGRIHTNYSLAITSTGRLSSSEPNLQNIPVRTA
EGRKIRAAFIAPKGHLLLSADYSQIELRILAHIANITALKEAFAQGQDIHAITASQMFGV
PIEEMHSDVRRRAKAINFGIIYGISAFGLANQLGFSRQEASRYIQLYFERFPGIKDYMET
TKTFARQNGFVETIFGRRIHYPEIKASNPQVRAFNERAAINAPIQGSAADIIRRAMIQME
DALKKEKLLAKMLLQVHDELIFEIPESESEKTMAVVKKVMENATMPVLSLSVPLEVKVMV
AQNWGEAH
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacaacagatcatctttttttggttgatggatcgggctatatttttcgtgcttat
tacgctttaccacctttaaagcgcaaaagggatggacttcctgtaggagctgtcgctggt
ttttgtaatatgctgtggaaattgctctgtgatgcgcgaaatacagctactggtgttgtt
ccgacacattttgctgttatttttgattattcatccgatacgtttcggaaacaaatttat
ccacaatataaagcgaatcgagaaacacctcctgaagatcttattcctcaatttgctctc
atacgccaagcaacaaaggcttttaatttaccttgtatcgaaaaggaagggtttgaagcg
gatgatctcattgcgacttatgcacaactggcaacaaaggttggaacaaaaacaactatt
atttcttctgacaaagatcttatgcagttggtgaatgcacacgtatctttgtatgatgga
atgaaagataagcatatcggtatttctgaggttatagaaaaatggggtgtggcacctgaa
aaaatggttgatttgcaggctttgattggagattcgacagacaatgtaccaggtattcca
ggcattggccccaagactgcagcccaattgttagatcaatttggtactcttgatcttttg
ctgcagcgcatatcagaagttaagcaaacaaaacgacgtgaaaatcttcaagcttatagt
gaacaggcaaagatttctcgtgagttggttcggcttaaaagagacgttcctatagacaat
agtttagatgattttattttggaatcacaagatggtccgcgtttgatcgcttttcttaag
gctatggaatttacgacattaacacgtcgtgtggcagaggtaacagaatgtgatgcagct
gttattgatgcagctgatatcaatgttgcatggtcggattctacacaggagattgatcat
gaagctaaaaaagcggaaagagtatcttctcatggtttttctgaaaattctccgcaattg
ttagcacaaaagcgtaaagatcaagcaaaaacgcaaaaaatcacaagagatacttatacg
accattcttgatgaagaagttttaaaagaatggctatcggaagcacaagagcaaggtttt
ttcgcttttgatactgaaacgacttcgcttgatccactacaagcaaagcttgttggtttt
tcattggcattacagccggaaaaagcagcttatgtacctcttgaacacattgaaggagga
gatgatcttttagggggcgggcgcattgccgggcaaattgagacacaaaaggctttggca
cttttaaagccgatattagaaaatcaagcgatattaaaaattggacagaatataaaatat
gattggttagtgatgaaacaacacggcattgtgataagctcttttgatgacaccatgctt
ttttcatatgctttagatgctggaactttaacacataatatggatgatttatccgtacgt
tggcttgggcataaaccaattgcttataaggatttaacgcataatggaaaaaagattact
tcttttgcgcaagtagatttgcaacaggcaaccctttatgctgctgaggatgctgatgta
acacttcgtttgtggcaagttttaaaaccacagcttgtcgcgcagggaatgacaaaaatt
tatgaacgttttgatcgacctctgatagaagttcttgcaagaatggaagagcgtgggatt
ctcattgacagacagattttactacgtctttcagaagaattagcgcaagctgcttttatt
ttggaagaagaaatttatcagctcgccggtgaaaaatttaatcttgcttcgccaaagcaa
ttgggcgatatcctttttgataaaataggcttgcttggtggtgttaaaaccaaaggtgga
caatggtcaacctctgcccagaccttagaagaattggctgctgaagggcatattttgcca
cgtaaaattattgattggcggcaacttgcaaaactaaaatctacttacacagatgcttta
ccttcttacattttgccaaaaacagggcgtattcatacgaattattctttggcaataaca
tcaacggggcggttatcatcatcagaacctaatttacaaaacattccagtacggaccgct
gaaggacgtaaaatacgagcagcttttattgctccaaaaggacatttgctgttatcggct
gattatagccagattgaattgcgcattcttgcgcatattgccaacatcacagcgttaaag
gaggcttttgcccaaggtcaggatattcatgctattacggcatcacaaatgtttggggtt
ccgatagaagagatgcattcagatgtacgacgccgtgcaaaagcaattaattttggtatt
atttatggtatttcagcttttggattagccaatcaattgggtttttcccgacaagaagca
agccgttatattcagctttattttgaaagatttccaggaattaaagactatatggaaacg
acgaaaacatttgcacgccaaaatggttttgtagagacaatttttgggcgtcgtatccat
tatccagaaataaaagcatcgaacccacaagttcgtgcttttaatgagcgtgctgctatt
aatgccccaattcaaggatcagcggcggatattattcgccgcgccatgattcaaatggaa
gatgctttaaaaaaggaaaaactgttggcaaaaatgttgctgcaagtgcatgatgaactc
atttttgagataccggaaagtgaaagtgaaaaaaccatggctgttgttaaaaaggttatg
gaaaatgctacaatgccagtcctctctttgtctgtaccccttgaagtgaaagtcatggtt
gctcaaaattggggtgaagcacattag
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