Bremerella volcania: Pan97_12890
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Entry
Pan97_12890 CDS
T06456
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bvo
Bremerella volcania
Pathway
bvo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pan97_12890 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvo03019
]
Pan97_12890 (rhlE)
Enzymes [BR:
bvo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Pan97_12890 (rhlE)
Messenger RNA biogenesis [BR:
bvo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pan97_12890 (rhlE)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Utp25_C
Cas3-like_C_2
ResIII
Motif
Other DBs
NCBI-ProteinID:
QDU74282
UniProt:
A0A518C4X8
LinkDB
All DBs
Position
complement(1537323..1538852)
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AA seq
509 aa
AA seq
DB search
MKFTDVALAEPFQRALKKLKYETASPIQAEAIPVIMDGKDLIGCAQTGTGKTAAFALPML
NRLLETLPPREQPTERVRGKRVPHNKFHGPPRPIRGLILAPTRELAAQIGESLKKYGGAT
ALKHTVVFGGVSQNPQVRDLRWGVDTLVATPGRLLDLMNQGHINLSQLEILCFDEADQML
DMGFLPALKKIVAACPDQRQTVMFSATMPPEIRELAEKWLTNPVSVQVAPVAAPADRISQ
SVHFVDKRRKAALLSRYLQDTPRSRTLVFVRTKHDCDKIVQLLEKDGLRAAAIHSNKSQS
VRSRTLAQFKSNRPPVLVATDIAARGLDVNDVSHVVNFDLPETPETYVHRIGRTARAGAE
GVAVSFCAGGERRLLKQIERLTRISIPIEPTIEGFETSEPIVYDEPRRGGSRGRGPRSGG
PRSGSDSQANGGPRKFGSKPGKKPRRFGSKASSNSQSRDHQGGDDRPSDKKPAAAGPFGN
KKKPKRIGGKPATGFGQKQKRRRPASAKG
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttaccgacgtcgcgctagccgaaccgtttcagcgtgccctgaagaagctgaaa
tacgaaacggcctcgccgattcaagcggaagccattcccgtcatcatggacggcaaagac
ctgattggctgtgcccaaaccggcactggcaagaccgcggcatttgcgctgcccatgctt
aatcgcctgctcgagacgctacctccccgggagcagccgaccgagcgtgttcgcggcaag
cgcgttcctcacaacaagttccacggaccaccacgcccgatccgtggcctgattctggcc
cccacacgtgagttggccgctcagattggcgagagcctgaagaagtacggcggggcaaca
gcgctgaaacacaccgtggtgttcggcggcgtttcgcaaaaccctcaggttcgtgatctt
cgctggggtgtcgacaccctggtggccacgcctggccgcctgctcgacctgatgaaccag
ggtcacatcaacctctcgcagttggaaatcctttgcttcgacgaagccgaccagatgctc
gacatgggcttcttgccggccttaaagaagatcgtcgccgcgtgtcccgatcagcgtcaa
acggtgatgttctcggccaccatgccgccggaaattcgcgaactagccgaaaagtggctg
accaatccggtctcggttcaggtcgccccggtcgcggctccggccgatcgcatctcgcag
tcggtccacttcgtcgacaagaggcgcaaagccgccctgctctcacgttacctgcaagac
accccacgcagccgaacgttggtgttcgtccgcaccaagcacgactgcgacaagattgtc
caactgctggaaaaggacggcctgcgtgccgccgcgatccacagcaacaaaagccaaagc
gtccgcagccgcacgctggcccagttcaagagcaaccgcccaccggttctggtagccacc
gacatcgccgcacgcggcctggacgtgaatgacgtttcgcacgtggtgaacttcgatcta
ccggaaacgccggagacatacgtccatcgaatcggccgcaccgcgcgggctggcgccgaa
ggggtggctgtatctttctgtgccggtggcgagcgccgcttgcttaagcagatcgaacgc
ttgacgcgaatctcgatcccgatcgaaccgaccatcgaaggcttcgagacgagcgaaccg
atcgtgtacgacgaaccaagacgcggtggttcgcgcggacgcggtcctcggagtggcggt
ccacgcagtggtagcgattcgcaagcaaatggtggtccacgtaagtttggcagtaagcca
ggcaagaagccgcgtcgtttcggctcgaaggcttcttccaatagtcaaagccgcgaccac
caaggcggcgacgatcgacccagcgacaagaagccagccgcggccggtcctttcggcaat
aagaagaagccgaagcgcatcggcggtaagccggcaaccggcttcggccagaagcaaaag
cgacgccgcccggcaagtgccaagggctaa
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