Bremerella volcania: Pan97_18170
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Entry
Pan97_18170 CDS
T06456
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bvo
Bremerella volcania
Pathway
bvo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pan97_18170 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvo03019
]
Pan97_18170 (rnr)
03016 Transfer RNA biogenesis [BR:
bvo03016
]
Pan97_18170 (rnr)
Enzymes [BR:
bvo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Pan97_18170 (rnr)
Messenger RNA biogenesis [BR:
bvo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Pan97_18170 (rnr)
Transfer RNA biogenesis [BR:
bvo03016
]
Prokaryotic type
tRNA degradation factors
Pan97_18170 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
RNase_II_C_S1
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
QDU74801
UniProt:
A0A518C6G1
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All DBs
Position
2131219..2133570
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AA seq
783 aa
AA seq
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MEIEEIEAKLLSHVNAPNYQPVKPKVIAKKLGLTEDDRKPFKRALKRLIRKGLVRYGANH
LVKKPSAEDGDKRIVGRYQRNAKGFGFVRPQGVAASKGREADIFVPPRRGMDAATGDLVM
IRTYLGRGPGGDQRLCGEVVEVVERETHCFVGTYYEIHGMALVQVDGRIFAEPIPVGDPG
AKNAQPEDKVVIEMVRFPSHAHDGEAVIVEVLGKRGEPGVDLMSIIVEYDLPREFPEDAL
EVAREQAELFDESIPEGRRDFTPDTVITIDPIDARDFDDAISLERLDNGHWILGVHIADV
SHFVPEGSALDVEARNRATSVYLPDKVIPMLPETISNNLASLQPDKVRYTRTAIIEFTPE
GARVNCEVCKGAIRSKRRFAYEEVDEYLADREPWKEKLTPEVFSLLGSMHELAMMLRKRR
FARGSMELSMPELKLDINKDGEVIGAHTVENTESHQIIEEFMLAANEAVAEALFDRELFF
LRRAHASPDPKKLADLTEFVRDLGIECESLESRFEIIRVLNEVKGKPEQAAVNYAVLRSM
QKAVYSPDEIGHYALASEHYCHFTSPIRRYPDLTIHRMFDQIEHGVRPPQDFGQMQLEGE
HCSEREQRAADAERELVKIKLLTYMSTRIGEEVNAVVTGVESFGLFVQALEIPADGLVRI
DSLNDDFYRYDATTHSLVGHHEGNSFRLGDVLTVRIARVDLDRRELDYQFVEKTGEQSTK
QPAKSLGGRSGGGKFKPKVQSSSMKFSTQSSRPKKGSRSADKGKGGTTPSRPKKEKRSKR
RGR
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atggaaatagaagaaatcgaagcaaagttactcagtcacgttaacgcaccgaattatcaa
ccggtcaaaccaaaagtcatcgccaagaagttgggccttaccgaggacgatcggaagccc
ttcaagcgagccctgaagcggctcattcggaaaggattggttcgctacggagccaatcat
ctggtgaaaaagccctcggcggaggatggcgataagcgaatcgtcggccgctaccagcgc
aacgccaaaggttttggattcgtccgtccacaaggggttgccgcctcgaaaggacgcgaa
gccgacatcttcgtccctccgcgacgcgggatggatgccgccactggcgacctcgtcatg
atccgcacttacctggggcgtggtcccggcggcgatcagcgcctgtgtggtgaagtggtc
gaggtggtcgagcgcgaaacgcattgtttcgtcggcacctattatgaaatccacggcatg
gccctggtccaggtcgatggtcgtatcttcgccgagccgattcctgttggggatcccggg
gcgaagaatgctcagccggaagacaaagtcgtcatcgaaatggtccgctttccttcccat
gcccacgacggcgaagcggtcatcgtggaagtgctgggcaaacggggcgaaccaggcgtc
gacttgatgtcgatcatcgtcgaatacgacctgccgcgcgagttccccgaagatgccctg
gaggtggcccgcgaacaggccgaactgttcgacgagtcgatccccgaagggcgtcgcgac
ttcacccctgacacggtcatcacgatcgacccgatcgatgcccgagacttcgacgatgcg
atcagtctggagcggctggacaacgggcactggatcctgggcgtacacatcgccgacgtc
tcgcactttgtccccgaaggaagtgcgctcgacgtcgaagctcgcaatcgcgcgaccagc
gtctacctgcccgacaaagtcattccgatgttgccggagacgatcagcaacaacctggcc
agcctgcagcctgacaaggttcgctacacgcgaacggcgatcatcgagttcaccccggaa
ggagcccgggtgaactgtgaagtttgcaaaggagcgatccgcagcaagcgccgcttcgcc
tacgaagaggtggacgagtatttggccgatcgcgagccctggaaagagaaactcacgccg
gaggtctttagcttgctcggtagcatgcacgaactggcgatgatgctccgcaagcgtcga
ttcgctcgcggtagcatggaactgagcatgccggaattgaagctcgacatcaataaagat
ggcgaagtgattggtgcccacacggtggaaaacaccgagagccatcaaatcattgaagag
ttcatgctcgcggccaacgaagccgtggccgaagccctgttcgaccgcgagctcttcttt
ttgcgtcgtgcccatgcttcgccagatcccaagaagctggccgacctgaccgagttcgtc
cgcgatcttggtatcgagtgcgaaagcctggaaagccggttcgagatcatccgagtcttg
aacgaggtcaaaggcaagccggagcaagccgccgtcaactatgccgtcctgcgaagcatg
cagaaggccgtttacagtcccgacgagatcggccactacgccctggcgagcgagcattat
tgccatttcacctcgccaattcgccgctaccccgacctgacgatccatcgcatgttcgac
cagatcgagcatggcgtgcgtccgccgcaagacttcggccagatgcagcttgaaggagag
cattgcagcgaacgcgaacaacgcgcggccgatgccgaacgggaactggtcaagatcaaa
ctgctcacctacatgagtacccgcatcggcgaagaagtcaacgcggtggttaccggggtc
gagtcgttcgggctgtttgtccaggcactggaaatcccggccgacggtctggtgcggatc
gattcgctcaacgacgacttctaccgttacgatgccaccacccatagcctggtcggacat
cacgaggggaattcgttccggctgggggatgtgctgacggtgcgaattgcccgggtcgac
ctcgatcgacgcgaacttgattaccagttcgtcgaaaagaccggcgaacagagtaccaag
cagcctgccaaatcacttggcggacgctctggcggtggcaagttcaagccgaaggtccaa
agctcgagcatgaagttctcgacccagtcgagtcggcccaaaaaaggcagccggagtgcc
gacaagggcaaagggggcaccacgccgtcacgcccgaagaaagagaaacgctcgaaacga
cgggggcggtaa
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