Bremerella volcania: Pan97_36220
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Entry
Pan97_36220 CDS
T06456
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bvo
Bremerella volcania
Brite
KEGG Orthology (KO) [BR:
bvo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bvo03016
]
Pan97_36220 (rtcB)
Enzymes [BR:
bvo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Pan97_36220 (rtcB)
Transfer RNA biogenesis [BR:
bvo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Pan97_36220 (rtcB)
Prokaryotic type
tRNA splicing ligases
Pan97_36220 (rtcB)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QDU76570
UniProt:
A0A518CBH8
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All DBs
Position
complement(4432648..4434048)
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AA seq
466 aa
AA seq
DB search
MNRRQLTQLGVPEYALTEAVKAVSSAATTHGLRGADLKRQVREVLAAPNEFVDDPCYGLL
AAALTEDQTIEPLHEKVDYRTWGDDIDEMAHAQMREACKLPHASGAALMPDAHLGYGLPI
GGVLALEGAVVPYAVGVDIACRMKLSVLDMKLDSLDSRFDDYCRALEKGTRFGVGSVHQK
PQQHDVMDEDWNITKVTRQSKDKAWQQLGTSGSGNHFVEFGILTIGAEDAAGDSFDVQPG
KYVALLSHSGSRGAGAAVCSTYSNIARTKLPKKYESLKNLAWLTLDSEEGQEYWEAMNLM
GRYAAANHEVIHRLVSQLVGAQIIAGVENHHNFAWKETHDGREMIVHRKGATPAGEGVLG
VIPGSMGTPGFVVRGKGEASSFDSASHGAGRCMSRKKANDTFRIQNTRQELKEKGVHILS
AGSDEVPGVYKDIHEVMAAQSDLVDIVGRFDPKIVKMCGDGSRAED
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgaatcgtcgtcagctaacgcagttgggagttccagagtacgctttgaccgaagcggtg
aaagccgtatcgagtgcggcaaccacgcacggactgcgcggcgccgacttgaagcggcag
gtcagagaagttctcgctgcccccaatgagttcgtggatgatccgtgttacggattgctg
gctgccgcgctgacggaagaccagacgatcgaaccacttcatgaaaaggtcgactatcgt
acctggggtgacgacatcgacgagatggcccatgcgcaaatgcgggaagcatgcaagttg
ccgcatgcgtcgggggctgcgctcatgccggacgcgcacttgggatatgggctgccgatc
ggtggtgtgctggccttggaaggagcggttgtgccttacgcggttggtgtcgatatcgca
tgccgcatgaagcttagtgttttggatatgaagctggattcgctcgattcccgcttcgat
gattactgccgcgcgctggaaaagggcacgcgtttcggcgttggatcggtccaccagaag
cctcagcagcacgacgtgatggacgaagactggaacatcaccaaggtgacgcgtcagtcg
aaggacaaagcgtggcagcagttgggaacgtccggttcaggaaatcacttcgttgagttc
ggcattctgacgatcggcgcagaggacgccgcgggggattcgttcgacgtgcagccaggc
aagtatgttgcgttgctgagccatagtggaagccgtggcgctggagcagccgtttgcagc
acgtacagcaacatcgcgcgcacgaagctgccaaagaagtacgagtcgctgaagaacctg
gcatggttgacgctggacagtgaagaaggtcaggagtattgggaagccatgaacctgatg
ggacgctatgccgcggcaaatcatgaagtgatccaccgcctggtgagtcagcttgttggt
gcccagatcatcgcgggcgtcgagaatcaccacaactttgcctggaaggaaacgcacgat
ggacgtgaaatgattgtccaccgtaaaggcgcgactccggccggagaaggagtgctgggg
gtgattcccggttcaatgggaacgcctgggttcgtagtgcgcggtaagggggaagcgagt
agcttcgactcggcttcgcacggcgcgggacgctgcatgtcgcgaaagaaggcaaacgat
acgtttcgtattcagaacacgcggcaggaactgaaggaaaaaggcgtacacatcctgtcc
gctggttcggacgaagtccctggggtctacaaagacatccatgaagtcatggcggcgcag
agcgatctggtcgatatcgtgggacgcttcgatccgaagattgtcaaaatgtgcggtgac
ggaagccgggccgaggactag
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