Bremerella volcania: Pan97_49270
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Entry
Pan97_49270 CDS
T06456
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bvo
Bremerella volcania
Pathway
bvo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pan97_49270 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvo03019
]
Pan97_49270 (rne)
03009 Ribosome biogenesis [BR:
bvo03009
]
Pan97_49270 (rne)
Enzymes [BR:
bvo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Pan97_49270 (rne)
Messenger RNA biogenesis [BR:
bvo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Pan97_49270 (rne)
Ribosome biogenesis [BR:
bvo03009
]
Prokaryotic type
rRNA processing factors
Pan97_49270 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Antiterm
Motif
Other DBs
NCBI-ProteinID:
QDU77848
UniProt:
A0A518CF41
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Position
complement(5983400..5985199)
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AA seq
599 aa
AA seq
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MLVARYRRDNLSQNPSFREKAFAVMDPMHQSELFMKKEMLINVSQPEECRIAIVEDGILE
EFYLERTSQENFVGNIYKGVVVNLEPSIQAAFVDFGVGKNGFLHISDVEPQYFRQGGYDP
AAQYDRPEDLAASRFGSDFGDDDDGEEGDDDSPSGGAGTKTQQRRGRRQRPGARPRVKPP
IQEIFKRGDEVLVQVIKEGIGNKGPTLSTYISIPGRYLVLMPALGRVGVSRKIEDDQVRR
RLRGTLLDLDPPKGLGFIVRTAGQDRTKKDLSRDMAYLLRLWRLIVRRIRKSTGPCEIYE
ESDMIIRTIRDIFAADVDAIYIDRKEQYEAAKEFLQLVMPRFVDRLQRHDTKEALFRKYN
LDEEIAKIHQREVPLSRGGSIVIDQTEALVAIDVNSGNFRYDGSSEEAAYHLNLLAAKEI
ARQLRLRDLGGVIVNDFIDMRREKHRANVERALKDAVKRDRARTKILRTSPFGLIEMTRQ
RVRPSLKRSIFRDCPCCSGRGVVKSSESMAIEVTRVLIAAAQQPKASQINCRVNEEVAAY
LNNKKRREIAVIEDDNRVVVHIIGSESVFPEHVEVECKDAEGRRIYMTDPHDASRNGRR
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgttggtcgcaagatatcgtcgagacaacctcagtcaaaacccgtcatttcgagaaaaa
gctttcgcggtcatggaccccatgcaccaaagcgagcttttcatgaaaaaagagatgctg
atcaacgtatcgcagccggaagaatgccggattgcgatcgtggaagatggaattctggaa
gagttctatctggaacggaccagccaggaaaactttgtcggcaacatttacaaaggcgtt
gtcgtcaatctcgagcccagtatccaagcggccttcgtcgacttcggtgtcggtaagaat
ggctttctccatattagcgacgtcgagccacaatacttccgccaaggtggatatgatccg
gcagctcagtacgatcgccctgaagacttggccgcatcgcggtttggcagtgacttcggc
gacgatgacgatggcgaagaaggcgacgatgacagcccgtcaggcggcgccggaacgaaa
acgcagcagcgacgcggtcgtcgtcaacgacccggtgcccgcccacgcgtgaagccgccg
atccaagagatcttcaagcggggggacgaagtcctcgtgcaggtcatcaaggaagggatc
ggtaacaaggggccaactctgtcgacctacatcagcattccaggacgctacttggttctg
atgccagccctgggccgcgtaggcgtttctcgcaagattgaagacgaccaggtgcgtcgt
cgtttacgcggcacgctgttggacctagatccaccaaagggattgggctttatcgtccgc
actgccgggcaagatcgaacgaagaaagatctgtcgcgcgacatggcgtatttgcttcgc
ctgtggcgtttgatcgttcgccgcatccgcaagtcgacgggcccctgcgagatctacgaa
gaaagcgacatgatcattcgcaccattcgcgatatcttcgccgcggatgttgatgcgatc
tacatcgatcgtaaagaacaatacgaggccgccaaggagtttctacagttggtgatgcca
cggttcgtggatcgcctgcagcgacacgacacgaaggaagccctcttccgcaagtacaac
ctggacgaggaaatcgccaagattcaccagcgcgaagttcccttgtcgcgcggcggttcg
atcgtgatcgatcagaccgaggcgctagtggccatcgacgtgaacagtggtaacttccgc
tacgatggcagttcggaagaagccgcttatcacctgaatttgctggcggccaaggaaatc
gctcgccagttgcgactgcgtgatctgggtggtgtgatcgtcaacgacttcattgatatg
cgtcgagaaaagcatcgagcgaacgtcgagcgtgccctcaaggatgccgtcaaacgggac
cgtgcccgcaccaagatcctgcggacgagcccctttggtttgatcgaaatgacacgtcag
cgtgtccggccaagtctcaagcgaagcatcttccgggattgcccttgctgcagtggtcgc
ggcgttgtgaagtcgtccgagagcatggcgatcgaagtcacgcgtgtcttgatcgcggcg
gctcagcagcccaaggccagccagatcaactgccgggtgaacgaggaagtcgcagcctac
ctgaacaacaagaaacgccgggaaatcgcggtcatcgaagacgacaatcgggtggtcgtt
cacatcatcggtagcgagtcggtcttccccgagcatgtcgaagtggaatgtaaggatgcg
gaagggcgccgtatttacatgactgacccgcacgatgcttcccgcaatgggcgtcgttaa
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