Rossellomorea vietnamensis: FHE72_08970
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Entry
FHE72_08970 CDS
T07200
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bvq
Rossellomorea vietnamensis
Pathway
bvq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FHE72_08970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvq03019
]
FHE72_08970
Messenger RNA biogenesis [BR:
bvq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FHE72_08970
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
DUF4453
pre-PUA_NIP7
Motif
Other DBs
NCBI-ProteinID:
QHE61140
UniProt:
A0A6I6URK3
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All DBs
Position
complement(1733144..1734811)
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AA seq
555 aa
AA seq
DB search
MKFVKNDQTAVFALGGLGEIGKNTYGVQFQDEIILIDAGIKFPEDELLGIDYVIPDYTYL
VKNADKIKGLFVTHGHEDHIGGIPYLLRELNIPIYGGKLALGLIKNKLEEHGLLRNAKLN
VIQEDDVVKFRKTSVTFFRTTHSIPDSYGIVVKTPPGNVVHTGDFKFDFTPVGEPANLTK
MAEIGKEGVLCLLSDSTNAEVPNFTMSERKVGESINDIFRKVDGRVIFATFASNIHRLQQ
VVEAAVFHNRKVAVFGRSMEAAITIGQELGYINAPKDTFIEHNQINRLPANEVAILCTGS
QGEPMAALSRIANGTHRQIQIQPGDTVVFSSSPIPGNTISVNRTINLLYRAGAEVIHGPL
SDIHTSGHGGQQEMKLMLRLMNPTFFMPIHGEFRMQKMHAELGVDCGVQPENCFIMDNGE
VLALSNDSAQVAGKIPSGNVYIDGSGIGDIGNIVLRDRRILSEEGLVIVVVSIDMKDFKI
ASGPDLISRGFVYMRESGDLINEAQTLISKHLNKVLERRTSQWSEIKNEITDTLAPFLYE
KTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgtaaagaatgaccaaaccgctgtatttgcccttggcggtttaggtgaaatc
ggtaaaaacacatacggcgtacaattccaagacgaaattatcctgatcgatgcaggaatc
aaattccctgaggacgaactgctcggtatcgattatgtaatccctgattacacgtatctc
gtgaagaatgcagataaaatcaagggactcttcgtcactcacggacacgaagaccatatc
ggaggaatcccttatttacttcgagagttaaacatcccaatatacggtgggaaacttgcc
cttggtcttattaagaataagctggaagagcacgggttattacgcaatgcgaaattaaat
gtcatccaggaagatgatgttgtgaaattccgcaaaacatctgtaaccttcttcagaaca
acacacagtatcccggattcttacggtatcgttgtcaaaacaccacctggaaatgttgtt
catacaggtgacttcaaattcgatttcacgccggttggtgagcccgcgaacttaaccaaa
atggctgagatcggaaaagaaggcgttctatgcctactgtctgacagtacaaatgctgaa
gttccaaacttcacgatgtcggaacgtaaagtcggggaaagcatcaatgatattttccgt
aaagtggacggaagggtcatctttgctacattcgcttcgaatattcaccgtcttcaacaa
gtggtcgaagcagcagtgttccataacagaaaggttgctgttttcggaagaagtatggaa
gcagccatcacgattggacaagaattaggatatatcaacgctcctaaggatacattcatt
gaacataaccagatcaatcgccttccagcgaatgaagtggctattctatgtacaggttcc
caaggtgagccgatggctgcattatcaaggattgcaaacggtacccaccgtcaaatccag
attcagcctggtgacaccgttgtcttctcttcttcaccaattccggggaacacaatcagt
gtcaaccgtacgatcaaccttttatatcgtgccggtgcagaagtcatccatggaccatta
agtgatattcatacatccggtcacggtggacagcaagagatgaagctgatgcttcgcctg
atgaatccaaccttctttatgccgatacacggtgagttccgtatgcagaagatgcacgcc
gaactcggtgtcgattgtggcgtccaaccggaaaactgcttcatcatggataacggtgaa
gtccttgcactaagcaatgactccgcacaggtagcagggaagatcccttctggaaacgtc
tatatcgatggaagcggaatcggtgacatcggtaatattgtccttcgtgaccgccgcatc
ctatcagaagaaggtcttgtgatcgtcgttgtcagcatcgacatgaaagatttcaagatc
gcttccggcccggacctgatttcaagaggattcgtctacatgcgtgaatcaggcgacctt
atcaatgaagcgcaaacgctcatttctaaacacttgaacaaagtgcttgaaagaagaaca
tcccaatggtcagaaatcaagaatgaaatcacagatacacttgctccattcttatatgaa
aaaacgaaacgtcgcccgatgatcctaccgatcatcatggaagtataa
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