Rossellomorea vietnamensis: FHE72_20305
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Entry
FHE72_20305 CDS
T07200
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bvq
Rossellomorea vietnamensis
Pathway
bvq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FHE72_20305 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvq03019
]
FHE72_20305 (rnr)
03016 Transfer RNA biogenesis [BR:
bvq03016
]
FHE72_20305 (rnr)
Enzymes [BR:
bvq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FHE72_20305 (rnr)
Messenger RNA biogenesis [BR:
bvq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FHE72_20305 (rnr)
Transfer RNA biogenesis [BR:
bvq03016
]
Prokaryotic type
tRNA degradation factors
FHE72_20305 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
OB_RNR_1st
S1_RRP5
OB_Dis3
RNase_II_C_S1
CSD
MarR_2
Motif
Other DBs
NCBI-ProteinID:
QHE63085
UniProt:
A0A6I6UJE8
LinkDB
All DBs
Position
complement(3926838..3929180)
Genome browser
AA seq
780 aa
AA seq
DB search
MDENIKVHVDRLLSYMKEEAYKPLTVQELEEAFGIEGSTNFKEFVKALVVMEEKGLVVRT
RSNRYGLPEKMNLVRGKVSAHAKGFAFVIPEESGMDDIFIPPNETNNAMHGDIVLVRVST
SSSGSRREGTIVRIVERGVDQMVGTFTESKHFGFVIPDDKKFASDIFIPKSAQMGAAEGH
KVVVKLTSYPEGRKSAEGEVIEILGHKNDPGVDILSIIHKHGIDVEFPEEVMDQANKVPS
EIDESEIPNRKDLRDQTIVTIDGADAKDLDDAVTVTKLDNGNYKLGVHIADVTYYVKESS
PIDQEAFDRGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCDMEISPEGDVVKHEI
FQSVIKTTERMTYSDVNKILVDKDEELRTKYEPLVPMFEEMEDLAQVLRTKRMKRGAIDF
DFKEAKVLVNEEGEPTDVVLRERSVAEKLIEEFMLVANETVAEHFHWMEVPFIYRIHEDP
KEDKLQRFFEFITNFGLIVKGTANSIHPRALQEIVEDVQGEPEEMVVSTMMLRSMQQAKY
DPESLGHFGLATEFYTHFTSPIRRYPDLIVHRLIRTYLIEGKLDQATREKWGAQMGHIAE
HTSSRERRAVDAERETDELKKAEYMEDKVGEEYDGIISSVTNFGMFVELPNTIEGLVHVS
YMTDDYYRFDERHLAMIGERTANVFRIGDEITVRVVSVNKDERAIDFEIVGMKGQRKERE
GRVRSFSAEKGKSNRGKSDRSSSRKKDGEWSTRPPKNNKKKKTNKKHFENAPRSKRKKKK
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaaatattaaagtgcatgtggataggctcctttcctatatgaaggaagaagca
tacaagccattgacggtgcaggagcttgaagaagccttcggaattgaagggtccacgaat
ttcaaggaatttgtcaaagcacttgtcgtaatggaagaaaaggggctagtcgtacgaaca
agaagtaaccgctacggcctgcctgagaaaatgaatctggtcagggggaaagtatccgcc
catgcaaaaggatttgcgtttgtgataccggaagaatccggaatggatgatatcttcatc
cctcctaacgaaacgaataacgccatgcatggcgatattgttttggtgagggtttccacc
tcttcttcaggttcacgaagagaagggaccatcgtcaggatcgttgaacgcggtgtcgat
caaatggtcggtacgttcactgaaagcaagcatttcggttttgtcatccccgatgataag
aagtttgccagcgacatcttcatccctaagtctgcccagatgggtgcggcggaaggacat
aaggtcgtcgtaaagttgacgtcttatccggaaggacgcaagagtgccgaaggggaagtc
atcgaaattctcggtcataaaaatgatcctggagtcgatattctgtcgatcatccataaa
catgggattgacgttgaatttcctgaagaggtcatggatcaggcaaataaagtgcctagt
gaaatcgatgaatcggaaattccgaaccggaaagatcttcgcgatcaaaccatcgtgacg
atcgatggggcagatgccaaggatctggatgatgccgtaacggtgacgaagcttgacaac
gggaactataagctcggagtacatattgcagacgtgacgtactatgtcaaagagagctca
ccgatcgatcaggaagctttcgatagaggaacgtctgtctatctcgtagaccgggtcatc
ccgatgattccgcatcgattatccaacgggatctgttcccttaatccaaaagtggatcgt
ttaacgttatcatgtgatatggaaatctcacctgaaggcgatgtcgtcaagcatgaaatc
ttccagagtgtgattaagacaaccgaacgcatgacctattcagatgtaaacaagatcctt
gtggataaagacgaagagctccgcacgaaatatgagcctttggttccgatgttcgaggag
atggaggacctggctcaggttctacgtactaaacggatgaagcgtggagccatcgacttt
gatttcaaagaagcgaaagtgctggtgaatgaagaaggggaaccgacggatgtcgtcctt
cgtgagcgttcagtggcagagaagctgatagaagaattcatgttagtggccaatgagaca
gttgccgagcatttccactggatggaagtgccgttcatctaccgaatccatgaagatccg
aaagaagataagcttcagcgcttcttcgagttcatcaccaatttcgggttgatcgtgaaa
ggaacagcgaatagcatccatccccgtgcccttcaggaaatagtagaagatgtacagggc
gaaccggaagaaatggtcgtttcgacgatgatgcttcgttccatgcagcaggcgaaatac
gatcctgaaagccttggtcactttggactcgcgactgagttctatactcatttcacatca
ccgatccgtcgttaccctgacttgatcgttcaccgtttgatcagaacgtacttgatcgaa
gggaaactggatcaggccacccgtgaaaaatggggtgcgcaaatgggtcatatcgctgag
catacatcgagccgtgagcgccgagcagtggacgcagagcgtgaaaccgacgaattgaaa
aaagcagagtacatggaagacaaagtgggagaggaatacgacggaatcatcagctccgta
acgaacttcggaatgttcgtcgaattgccgaataccatcgaaggccttgtccatgtaagc
tacatgacggatgattactaccggtttgatgaacgtcaccttgccatgatcggcgagagg
accgctaacgtgttcagaatcggtgatgaaatcacagtacgtgtcgtgagcgtcaacaaa
gatgagcgcgccatcgattttgaaatcgtaggcatgaaaggacagcgcaaggagcgcgaa
ggtcgtgtccgttcgttttctgcggagaaaggaaaatcaaaccgcgggaagtcggatcgt
tcttcttcccgtaaaaaggacggggaatggtcaacgcgtccgcctaaaaacaataagaag
aaaaaaacaaataaaaaacattttgaaaatgcacctagaagcaaacgaaaaaagaagaag
taa
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