Blastochloris viridis: BVIR_1108
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Entry
BVIR_1108 CDS
T04109
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bvr
Blastochloris viridis
Pathway
bvr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BVIR_1108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvr03019
]
BVIR_1108
03009 Ribosome biogenesis [BR:
bvr03009
]
BVIR_1108
Enzymes [BR:
bvr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BVIR_1108
Messenger RNA biogenesis [BR:
bvr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BVIR_1108
Ribosome biogenesis [BR:
bvr03009
]
Prokaryotic type
rRNA processing factors
BVIR_1108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ALK08897
UniProt:
A0A0H5B6K1
LinkDB
All DBs
Position
complement(1213383..1216223)
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AA seq
946 aa
AA seq
DB search
MANKMLIDSTHPEETRVVVVRGNRVEEFDFESAARKQLRGNIYLAKVTRVEPSLQACFVE
YGGNRHGFLAFNEIHPDYYQIPVADRLALLEEEKRAARAEREAEDAKLRNDRKRRRRRRP
DSAAVAARTVGVDAVVSEAPSPETAEPATAADAVPAVSDALPATESPATEAPEAVAEPTV
EPVAAPSERRPAKSDEDEDEDEAEEDEEDEDDEEDDEEDEDDDDEEEDDEDDEDEDEEDD
DEDDDEDEDGADKPAKAKVVEIVGSGEALEEMPERVARPLRRQYRIQEVIKRRQVLLVQV
VKEERGTKGAALTTYLSLAGRYSVLMPNTARGGGISRKITSAADRKRLKSVAAELEVPEG
MGVILRTAGANRTKTEIKRDFEYLLRLWETVRELTLQSSAPALVYEEGSLIKRAIRDLYN
KDIDEVLVAGEDGYREAKEFMRMLMPSHAKNVQPYRETAPIFARSGVEPQLDAMFSPTVQ
LRSGGYIVINQTEALVAIDVNSGRSTREHSIEETALKTNLEASDEVARQLRLRDLAGLIV
VDFIDMDEKRNNRAVERRLKEALKNDRARIQVGRISHFGLLEMSRQRIRTGVLESSSEIC
PHCGGTGHVRAPASVALHVLRAIEDLLIKSASHDLIVRTRTPVALYCLNQKRSHLFELER
RFGVLIEIEADDSITGQIQHVIDKGALAKGPVVRAALAPIQPDAIAPEDEEIEEVEAEAE
AEVEAEVEVEDTEAEATADNGRDANGRRRRRRRRRGRDDAQGDLPAESAGERDDAPRLAA
PQPTGEDDDDDGEDGDEARDGAEAGDANSEERRRRRRRGRRGGRRGRRDREGLPGEDAEA
GEGDDEVTLQPTPRLELIPPLVDSAEPATIEAAEPAPQAESHQAEPMPVEVPRVEAPEVE
APKVEVAPVTEPESQPRGEPVHQVLTPDDDNPNRPKRSGWWSRRVG
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaagatgcttatcgattccacccacccggaagagacccgggtggtcgtggtg
cgcggcaaccgggttgaggagttcgatttcgaatccgccgcccgcaaacagctccgtggc
aacatttatctcgccaaggtcacccgcgtcgaaccttcgctccaggcctgtttcgtcgaa
tacggcggcaatcgccacggtttcctcgccttcaacgaaatccaccccgactactaccag
atcccggtcgccgaccgcttggcgttgctggaagaggaaaagcgtgccgcccgcgccgaa
cgcgaggccgaggacgccaagctgaggaacgaccgtaagcgccgccgtcgccggcggcct
gacagcgcggcggttgccgcccgcaccgtcggcgtcgacgccgtggtgtccgaggcgccg
tcgccggagactgccgagccggccaccgccgccgacgcggtgccggccgtgagcgacgcg
ctgcccgccaccgaatcgccggccaccgaggcgcccgaagccgtcgccgaacccaccgtc
gagcccgtcgccgcgccgtccgagcgccgtcccgccaagtctgacgaagatgaggacgaa
gacgaggcggaggaagacgaagaggacgaggacgacgaagaggacgacgaagaggacgaa
gacgacgacgacgaggaggaggatgacgaggacgacgaagacgaagacgaggaggatgac
gacgaagacgacgacgaggatgaggacggcgccgacaagccggccaaggccaaggtcgtc
gagatcgtcggctccggcgaagcgctggaggaaatgcccgagcgtgtcgcccgtccgctg
cgccgccagtatcgcatccaggaggtgatcaagcggcgccaggtgctgctggtccaggtc
gtcaaggaggagcgcggcaccaagggcgcggcgctgaccacctacctctcgctcgccggc
cgctactcggtgctgatgccgaacaccgcccgcggcggcggcatctcgcgcaagatcacc
agcgccgccgaccgcaagcgcctgaagtcggtcgccgccgagctggaagtgccggagggc
atgggcgtcatcctgcgcaccgccggtgccaaccgcaccaagaccgagatcaagcgcgac
ttcgaatatctgctgcggctgtgggagaccgtgcgcgagctgacgctgcaatcgagcgcg
ccggcgctggtctatgaggaaggctcgctgatcaagcgcgccatccgcgacctctacaac
aaggacatcgacgaggtgctggtggccggcgaggacggctatcgcgaggccaaagagttc
atgcgcatgctcatgccgagccatgccaagaacgtgcagccctatcgcgagaccgcgccg
atctttgcgcgcagcggggtcgagccccaactcgacgcgatgttctcgccgacggtgcag
ctccggtccggcggttacatcgtcatcaaccagaccgaggcgctggttgcgatcgacgtc
aactccggccgctcgacccgcgagcattcgatcgaggaaaccgcgctcaagaccaatctg
gaagcctccgacgaggtggcacgccagcttcgcctgcgcgacctcgccggcctgatcgtg
gtcgacttcatcgacatggacgagaagcgcaacaaccgcgccgtcgagcgccggctgaag
gaagcgctgaagaacgaccgcgcccgcatccaggtcggccgcatctcgcacttcggcctg
ctggagatgagccgccagcgcatccgtaccggcgttctggagagctcctcggagatctgc
ccgcactgcggcggcaccggccacgtccgcgccccggcatcggtggcgctgcacgtgctg
cgcgcgatcgaggacctgctgatcaaatcggccagccacgacctcatcgtgcgcacccgc
accccggtcgcgctctactgcctcaatcagaagcgctcgcacctgttcgaacttgagcgc
cgcttcggcgtgctgatcgagatcgaggccgatgattcgatcaccggccagatccagcac
gtcatcgacaagggtgccctggccaagggtccggtggtgcgcgccgcgctggcaccgatc
cagcccgacgccatcgcgcccgaggacgaggagatcgaggaggtcgaagccgaagccgaa
gccgaggtcgaggccgaggtcgaggtcgaggacaccgaggccgaggcgaccgccgacaat
ggccgcgacgccaatggtcggcggcggcggcggcggcggcggcgcggccgcgatgacgcc
cagggcgacctgccggccgaaagcgcgggcgagcgcgatgacgcaccccggctcgccgca
ccccagccgaccggcgaggacgacgacgacgacggcgaggacggcgacgaagctcgtgac
ggtgccgaggccggcgatgccaatagcgaggaacggcggcggcggcggcggcgcggacgc
cgcggcggccggcgcggccggcgcgaccgcgaggggctgccgggcgaggacgccgaggcc
ggcgagggcgacgacgaggtgacgctgcagcccacgccccggctcgagctgatcccgccg
ctggtcgacagcgccgagccggcgaccattgaggccgccgagcccgcgccgcaggccgaa
tcgcatcaggccgagcccatgccggtcgaggtgccgcgggtcgaggccccggaggttgag
gctccgaaggttgaggtcgcgccggtcacggagccggaatcgcagccgcgcggagagccg
gtccatcaggtgctgaccccggacgacgacaacccgaatcgccccaagcgctcgggctgg
tggtcgcgccgggtcgggtga
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