Blastochloris viridis: BVIR_1695
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Entry
BVIR_1695 CDS
T04109
Name
(GenBank) RNA polymerase-associated protein RapA
Organism
bvr
Blastochloris viridis
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HDA2-3
Motif
Other DBs
NCBI-ProteinID:
ALK09471
LinkDB
All DBs
Position
1856355..1860476
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AA seq
1373 aa
AA seq
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MAIASRPFEHEAFFSVSRLASIFAALGPQERAILRLKALIGPATGKNVFMNCLNRLSSSK
PAWTSKTLTPVLEALREKKLLTEDLACVPGIIHRLAVEVIDSPDGAAMMAAIHATLGQDG
GRSWDYRTIETSTLRWQRLAVLLNDGDEFQRAIERHGRTFFHTDAPSIFDQHFAGVEVGA
EWLASRLPVFQSAILTAKANRWIGAGLGADYPSLMEHCHREPGLRAVAFSKMVDFDLLTG
QLGRLDQTLADLPKDTPADLPFPFRASRALLTGDPKTAVALFAEALKLYRKSNRKRKGGL
PGYVGLLQVCALLAADDVALQPEIEALTEVKEGHVGLFALRGLLELTRNKETVAKQAVQA
GLVLVGMTPHPPPVSTGLLAVAAALIDPEQVHRRAVTTFMPLFRAVESSMALPATMLAEA
LEHAGPDPVPYRTWLDRPDNEIAFRFLTLIKAKAPWERALESLEAMLAPARPAEPAPGAQ
TRRLVWLVNPDTREIQPVEQALKARGWSQGRAVALKRLREGDPALDYLDEFDRRACRAIR
RAVESWYNRDVFECHADSMLPALIGHPRVFDARSPAESVDLIAGRPELVLASDKTGFRLS
LSHAAAHPGAFIEIDAPGRWRVVVVDAGAIEAASILSAKGVAIPSSARERLSALARLTAP
ALPIRIETAEIEDAAATDGDPSPVVRLSPLGEGLKVALVVRPAGAHGPHFLPGQGGRFIN
AGTLRVRRDLEAERRLAATLSESCPSLGGDGPEWVLDDLVASLEFLGELRSLPTSPAMEW
PEGQKMSLKGVASAKGFKASVKGMEHWFSVSGTVAVDDDLVLDLKDLLDRLDNMQGRFVP
LDGGGFIALDRQFRQQLERLSRLGDGLKIPNAAGVAVRDLLDGAASVKADTRWKDFVRRL
DEAEGWEPTLAPGFAAELRDYQRDGFAWMSRLERWGAGALLADDMGLGKTVQAIAVMTAK
AAAGPMLVVAPTSVCGNWDAELNRFAPALRPVRLVESDNRDAVIGGLGAGDVLIVSYGLL
AREQDRLTAISWAMAILDEAQAIKNPDTRRAEASRRLKAEFRLALTGTPVENDLDELWSI
FAFVNPGLLGARERFARRFATPISRDNSANAKAALKALVRPFLLRRTKAQVLSELPPRTE
QTILVELEAEERAFYEALRQRALERLDEVGDERTRIHILAEITRLRQACCHPALVAADSG
IGSAKLEAFVDLVDNLIEGRHRALVFSQFVSHLGKVRGALDAKGIAYQYLDGSTPEAERH
KRVAAFQAGAGEMFLISLKAGGFGLNLTAADYVIHLDPWWNPAVEDQASDRAHRIGQSRP
VTIYRLIVKDSIEERIVALHRHKRNLADALLEGADASAQLSEEDLLNLIRSSE
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
gtggcgatagcctcgcgaccgtttgaacacgaggcctttttttccgtgtcccgtctcgcc
tcaattttcgccgcccttgggccgcaggagcgcgccattctccgcctcaaggcgctgatc
ggccctgcgacgggcaaaaacgtcttcatgaactgcctcaaccggttgagctccagcaaa
cccgcatggaccagcaagacgctgacgccggtgctcgaggcgctgcgcgaaaagaagctg
ctcaccgaggacctcgcttgtgtgccgggcatcatccacaggctggcggtggaagtcatc
gactcgccggatggcgcggcgatgatggccgccatccacgcgaccctgggccaggacggc
gggcgcagctgggactacaggacgatcgagaccagcacgctgcggtggcagcggctcgcc
gtgctgctcaatgacggggacgagttccagcgcgcgatcgagcgacatgggcgtaccttc
tttcacaccgatgccccgtcgatcttcgaccagcacttcgccggcgtcgaggtcggggcg
gagtggctggcctcgcgtcttcctgtgttccaaagcgcgatcctcaccgccaaggccaac
cggtggatcggcgccgggctgggggcggattacccgtccttgatggagcattgccaccgg
gaaccggggctgcgcgccgtcgccttttccaagatggtggatttcgatcttctgaccggc
cagcttggccgcctcgaccaaaccctcgccgacctccccaaggacacccccgccgatctg
ccgttcccgttccgcgcctcccgcgcgctgctgacaggggacccgaaaacggcggtcgcg
ctgtttgccgaggcgctgaagctctaccgcaagagcaaccgcaaacgaaaaggcggcctg
cccggctatgtcggcctgttgcaggtctgcgcgctgctggcggcagacgacgttgcgctg
caaccagagatcgaagccctgaccgaggtgaaggaaggccatgtcggcctgttcgcgctg
cgcggcctgcttgagctgacccgcaacaaagaaaccgtagcgaagcaggccgtgcaagcc
ggcctggtgctggtcggcatgacaccgcacccgccaccggtgagcacgggtcttctggcc
gtcgcagccgccctcatcgatccggaacaggttcatcgccgtgctgtgacgacattcatg
ccgctgtttcgcgccgtcgagagctcgatggcgctgccggcgaccatgctggcggaggcg
ctggagcacgccggccccgatccggtgccgtaccgcacatggctcgaccggccggacaac
gagatcgcgttccggtttctcacgctcatcaaggccaaggcaccgtgggagcgcgcgctg
gagagcctggaggcgatgctggcgcccgcacggcctgccgagccggcgccaggcgcccaa
accaggcggctggtctggctcgtcaatccggacacgcgggagatccagccggtggagcag
gcgctgaaggcgcgcggctggagccaagggcgggctgtggcgttgaagcgcttgcgcgag
ggcgatccggcgctcgattatctcgacgagttcgaccggcgcgcctgccgcgccatccgc
cgtgcggtggagtcctggtacaaccgcgacgtcttcgaatgccacgccgacagtatgctg
ccggccctgatcggccatccccgcgtgttcgacgcccgctcgccggccgagagtgtcgac
ttgatcgcggggcggccggagctggtgctggcctcggacaaaaccgggttccgtctgtcg
ctgtcccacgcggcggcgcatcctggcgccttcatcgaaatcgacgctccggggcggtgg
cgggtggtggtggtggatgccggcgccattgaagccgcatccatcttgtcggccaagggc
gtcgcgatcccgagttccgcgcgcgaacggctctcggcgctggcccgccttacggcgcct
gccttgccgatccggatcgagactgccgagatcgaggacgccgcagcgaccgatggcgac
ccgagcccggtggtgcggctctccccactgggcgagggcctcaaggtcgctctggtggtt
cgccccgcaggcgctcatggcccgcatttcctgccgggccaaggcgggcggttcatcaat
gccggcaccttgcgcgtgcgtcgcgacctggaggcggagcggcgcctggccgcgaccctc
agtgaatcctgcccgagccttggcggcgacggccccgaatgggtgctcgatgatctggtc
gccagcctggagtttctcggcgagctgcgatcgctgccaacgtccccggcgatggaatgg
cccgaaggacagaagatgtcgctcaagggcgtggcctcggccaaaggcttcaaggccagc
gtcaaggggatggaacactggttttcggtgagcggaacggtggcggtcgatgacgacctg
gtgctcgacctgaaagacctcctcgaccgcttggacaacatgcagggccgtttcgtgccg
ctggacggcggcggcttcattgcgctggaccgccaatttcgccagcagctggagcggctc
agccggctcggcgacgggttgaagattcccaatgcggcgggcgtcgccgtgcgcgacctc
cttgatggcgcagcgtcggtgaaggcggacacacgctggaaggacttcgtccgccgcctt
gatgaggccgagggctgggagccgacgcttgctcccggtttcgcagccgagttgcgcgac
taccagcgcgacggctttgcctggatgagccggctggagcgctggggcgccggcgccctg
ctcgccgacgacatgggtctcggcaagaccgtgcaagcgatcgcggtgatgacagccaag
gccgccgccgggcccatgttggtggtggcgccgacctcggtctgcggcaattgggacgcg
gagctgaaccggttcgccccggcgttgcggccggtccggctggtggaatccgacaaccgc
gacgcggtgatcggcgggctcggcgctggcgatgtgctgatcgtctcctacggccttttg
gcgcgcgagcaggatcggctcaccgccatctcctgggcgatggccatcctcgacgaggcg
caggcgatcaaaaaccccgacacaaggcgcgccgaggcgagccgccggctcaaggcagag
tttcgcctggcgctgaccggcacgccggtcgagaacgacctcgacgaattgtggagtatt
ttcgccttcgtcaatccgggcctgctcggggcgcgcgagcggttcgccaggcggttcgcc
accccgatcagccgcgacaacagcgccaatgccaaggcggcgctcaaggcgctggtgcgc
cccttcctcctgcgccggaccaaggcgcaagtgcttagcgagctgccgccccgcaccgag
cagacgatcctcgtcgaactggaggcagaggagcgcgcgttctacgaggcgctgcggcag
cgcgcgctggagcggctggatgaggtcggggatgagcgaacgcgtatccatatcctggcc
gagatcaccaggctgcgccaagcctgctgccatccggcactggtggcggcggacagcggc
atcggctccgccaagctggaggcgttcgtggacctcgtggacaatctcatcgagggccgc
catcgcgctctggtgttcagccagttcgtcagccatctcggcaaggtccgcggcgcgctc
gacgccaaggggatcgcctaccagtatctcgacggctcgacccccgaggccgagcgccac
aagcgggtggcggcgttccaggccggcgcgggcgagatgttcctgatcagcctcaaggcc
ggcggctttggcctcaacctcaccgccgcggattatgtgatccaccttgatccttggtgg
aacccggcggtcgaggaccaagcctccgaccgcgcccatcgcatcggccagagccgcccg
gtcaccatctaccgcctgatcgtcaaggacagcatcgaggaacgcatcgtcgcgctccac
cggcacaagcgcaacctcgcggatgcactgttggaaggcgccgatgcatcggctcaactc
tccgaagaggacctgctcaatctgatccgcagttctgagtga
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