Blastochloris viridis: BVIR_3204
Help
Entry
BVIR_3204 CDS
T04109
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bvr
Blastochloris viridis
Pathway
bvr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BVIR_3204
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvr03019
]
BVIR_3204
Enzymes [BR:
bvr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BVIR_3204
Messenger RNA biogenesis [BR:
bvr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BVIR_3204
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ALK10961
LinkDB
All DBs
Position
complement(3599811..3601373)
Genome browser
AA seq
520 aa
AA seq
DB search
MHCGRRKESNPLTEFSTLGLAAPILRALAEANHTHPTPIQLQAVPPVLAGRDLVGIAQTG
TGKTAAFALPILNRLATHPGPARPDKGTVRALILAPTRELAGQILDSVKIYGRHLRLKTA
LAIGGVSINPQIKALAHGVDVLVATPGRLMDLHNQRAVRLDRVEVLVLDEADQMLDMGFI
QTVRRIVGLLPAHRQSLLFSATMPKEIESLAAKMMREPVQVAVNPVAKTADRIDQRVLFV
DKAAKTAALVDVLSLESVDRALVFARTKHGADRIVRALDKAGLPAAAIHGNKSQNQRERV
LAAFRSGSVRTLVATDIAARGIDVAGISHVVNFDLPNVPESYVHRIGRTARAGAAGVAIS
LCDAEERPYLKAIENLIRCSIPTVDKRGEVVARAEPFRRDAAAAADASAPTRTKPVRSRS
KRRPGSAEGRQAGGVAVAPAKTEQRPAGKAGRERVAAPSAPAAAAPRAGRPAQQGAPTRG
KSRSASREPASEAGFASMAFMRPVRRPRPDERASAGRPTR
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
gtgcattgcggacgacgcaaagaaagcaaccccttgaccgaattctcaacgctcggcctc
gctgcgcccatcctgcgcgccctcgccgaggcgaaccacacccatccgaccccgatccag
ctccaggcggttccgccggttctcgcgggccgtgacctggtcggcatcgcccagaccggc
accggcaagaccgcggcgttcgcgctgccgatcctcaaccgcctcgccacccaccccggc
ccggcccggcccgacaagggcacggtgcgcgcgctgatcctggcgccgacccgcgaactc
gccggccagattctcgactcggtgaaaatctatggccgccacctgcgtctgaagacggcg
ctggccatcggcggcgtgtcgatcaatccgcagatcaaggcgctggcccacggcgtcgac
gtgttggtggcgacgcccggccggctgatggacctccataaccagcgggcggtccggctc
gaccgggtcgaggtcctggtgctggacgaggccgaccagatgctcgacatgggcttcatc
cagaccgtgcgcagaatcgtcgggctgcttccggcccaccgccagagcctgttgttctcg
gccacgatgccgaaggagatcgagtcgctggcggcgaaaatgatgcgcgagccggtgcag
gtggcggtgaacccggtagccaagaccgccgaccgcatcgatcaacgcgtgctgttcgtc
gacaaggccgccaagacggcggcgctggtcgacgtgctgagcctggagtcggtcgaccgc
gccctggtgttcgcccgcaccaagcatggcgccgacagaatcgtgcgtgctcttgacaaa
gccggcttgccggcggctgcaatccacggcaacaagtcgcagaatcagcgcgagcgcgtg
ctggccgcttttcgcagcggcagcgtgcggacgctggtggcgaccgatatcgccgcgcgc
ggcatcgacgtcgcgggtatcagccatgtggtgaatttcgacttgccgaacgtgccggag
agctacgtccatcgtatcggccgaaccgcccgcgctggcgccgcgggggtggcgatctcg
ctgtgcgatgccgaggagcggccgtatctgaaggcgatcgagaacctgatccgctgctcg
atccccacggtcgacaagcggggcgaggtggtggcccgggccgagccgttcaggcgcgat
gccgcggcagccgccgacgcatcggcgccgacccggacgaagccggtccgcagccggtcg
aagcgccggccggggtcggcggagggacggcaggctggtggcgtggcggtcgcgccggcg
aagaccgagcaacgtccggccggcaaggcgggacgcgagcgtgtggcagcgccgtcagcg
ccggcggcggcggctccgcgcgccgggcggccggcgcagcagggggcgccgacccgcggc
aagtcgcgctcggccagccgggagccggcgagcgaggccgggtttgcgtcgatggcgttc
atgcggccggtccggcggccgcgtccggacgagcgcgcgtcggcggggcgcccgacgcgt
tga
DBGET
integrated database retrieval system
