KEGG   Blastochloris viridis: BVIR_3290
Entry
BVIR_3290         CDS       T04109                                 
Name
(GenBank) hypothetical protein
  KO
K03628  transcription termination factor Rho
Organism
bvr  Blastochloris viridis
Pathway
bvr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bvr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BVIR_3290
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bvr03021]
    BVIR_3290
   03019 Messenger RNA biogenesis [BR:bvr03019]
    BVIR_3290
Transcription machinery [BR:bvr03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     BVIR_3290
Messenger RNA biogenesis [BR:bvr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     BVIR_3290
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB NACHT AAA_25 S1CSD-TOTE-2 AAA_22 AAA Fungal_virus_P2_C Spore_III_AA DUF6360
Other DBs
NCBI-ProteinID: ALK11046
UniProt: A0A0H5BF50
LinkDB
Position
3686773..3688038
AA seq 421 aa
MREVKLQDLKSKTPIELLAFAEEMQVENASTMRKQEQMFAILKQLASRDIDIIGEGVVEV
LSDGFGFLRSPDANYLPGPDDIYVSPSQIRKFSLRTGDTVEGRIRSPKEGERYFALLQVN
TINFEDPEKTRHKVNFDNLTPLYPDERLKMEVDNPTSKDLSPRVIDIVAPLGKGQRALIV
APPRTGKTVLLQNIAHAITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPAA
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSELILDRKVADKRTFPA
MDITRSGTRKEELLVPSDVLKKMYVLRRILTPMGTVDAIEFLIDKLRQTKSNQEFFDSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcgcgaagtgaaacttcaggacctgaagtcgaaaactcccattgaactcctcgccttt
gccgaggaaatgcaggtcgaaaacgcgagcaccatgcgcaagcaggagcagatgttcgcg
atcctgaagcagctggcctcgcgcgacatcgacattatcggcgagggcgtggtcgaggtg
ctgtcggatgggttcggcttcctgcgatcgcccgatgccaattatctgccgggccccgac
gacatctatgtttcaccctcgcaaatccgaaaattctcgctgcggactggcgacaccgtc
gagggacgaatccgcagccccaaggaaggcgagcgctatttcgccctgctccaggtcaac
accatcaatttcgaagacccggagaagacccgtcacaaggtcaatttcgacaatctgacg
ccgctttacccggatgagcggctcaaaatggaggtcgacaacccgacctccaaggatttg
tcgccacgggtgatcgacatcgtggcgccgctcggcaagggccagcgcgccttgatcgtg
gcgccgccccgcaccggcaagacggtgttgctgcagaacatcgcccacgccatcaccacc
aatcatcccgagtgctacctcatcgtgctgctgatcgacgagcggccggaggaagtcacc
gacatgcagcgctcggtgaagggcgaggtgatctcctcgacctttgacgagccggcggcg
cgtcacgttcaggtcgccgaaatggtgatcgagaaggccaagcgcctggtcgagcatggc
cgcgacgtcgtgatcctgcttgattcgatcacccgcctcggccgcgcctacaacacggtg
gtgccgtcgtccggcaaggtgttgaccggcggcgtcgatgccaacgccctgcagcggccc
aagcgcttcttcggcgctgcccgcaacatcgaggagggcggctcgctcacgatcatcgcc
accgcgctgatcgacaccggcagccgcatggacgaggtgatcttcgaggagttcaagggc
accggcaattccgagctgatccttgatcgcaaggtcgccgacaagcgcaccttcccggcg
atggacatcacgcggtcgggcacccgcaaggaagaactgctggtgccgagtgacgtgctg
aagaagatgtacgtgctgcgccgtatcctgacgccgatgggcacggtcgacgccatcgag
ttcctgatcgacaagctgcgtcagaccaagagcaaccaggaattcttcgattcgatgaac
acctga

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